PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.G02548.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family AP2
Protein Properties Length: 431aa    MW: 45007.6 Da    PI: 6.1469
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.G02548.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP246.59.3e-15172222155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV+ +k  grW+A+   +     +k+++lg f+t+eeAa+a+++a+ k +g
  Pahal.G02548.1 172 SKYRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDTEEEAARAYDRAAIKCNG 222
                     89********.7******5553..2.26**********************99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103211.6473136IPR001471AP2/ERF domain
SMARTSM003808.0E-1293142IPR001471AP2/ERF domain
SuperFamilySSF541715.17E-9100137IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.5E-11101136IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-18172232IPR016177DNA-binding domain
PfamPF008479.4E-11172222IPR001471AP2/ERF domain
CDDcd000185.27E-26172232No hitNo description
SMARTSM003801.2E-33173236IPR001471AP2/ERF domain
PROSITE profilePS5103216.489173230IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-17173230IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MWDLNDSPAA EATPPSPSAD DSGASSSSAA ALVEIPDDAD EDSAAAGADA VVTRQFFPAP  60
AVAAAGARAG WLRLSAAFPP PSAVAYGATV VGPAGASVDC GKQVYLGGFD TAHAAARAYD  120
RAAIKFRGVE ADINFSLEDY DDDMKQQMGN LSKEEFVHVL RRQSTGFPRG SSKYRGVTLH  180
KCGRWEARMG QFLGKKYVYL GLFDTEEEAA RAYDRAAIKC NGKDAVTNFD PSIYAEEIEP  240
AAAKGGGDEH NLDLSLGSSA GSKRGSLDGG DDETSDQRVP MAFDIDWQTA AARSTKAKFD  300
ASSKQPQMPP PPPAFQAAHH LPFSPRHHQQ FLSNGGDPGT AGGLSLAIGG AGGGGGHWPP  360
HLHQQQQRLL HGWGNGGGTS WPLPPHPPPP TNAAAATAAA ASSRFPPYVT TQGPPSWVQK  420
NGFHSLARPT *
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor (PubMed:22408071). Involved in spikelet transition and development (PubMed:22408071). Prevents lemma and palea elongation as well as grain growth (PubMed:22408071). Required for seed shattering through specifying abscission zone (AZ) development (PubMed:22408071). {ECO:0000269|PubMed:22408071}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025824498.10.0AP2-like ethylene-responsive transcription factor TOE3 isoform X1
SwissprotB8AVJ91e-162APL25_ORYSI; APETALA2-like protein 5
TrEMBLA0A2T7D0T50.0A0A2T7D0T5_9POAL; Uncharacterized protein
TrEMBLA0A2T8IE510.0A0A2T8IE51_9POAL; Uncharacterized protein
STRINGPavir.Gb00344.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55143658
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.27e-77AP2 family protein
Publications ? help Back to Top
  1. Zhou Y, et al.
    Genetic control of seed shattering in rice by the APETALA2 transcription factor shattering abortion1.
    Plant Cell, 2012. 24(3): p. 1034-48
    [PMID:22408071]