PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.G02430.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 446aa    MW: 46715.2 Da    PI: 7.0034
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.G02430.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH154.4e-053353721254
                     HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     R +++ +++  L++l+ +      +K + a++L +++eYIk L
  Pahal.G02430.1 335 RKEKLGDRITALQQLVSPF-----GKTDTASVLHETIEYIKFL 372
                     677888999*******998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.935323372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.5E-11333389IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.8E-8333382IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.71E-5333376No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042631Biological Processcellular response to water deprivation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071215Biological Processcellular response to abscisic acid stimulus
GO:0071472Biological Processcellular response to salt stress
GO:2000214Biological Processregulation of proline metabolic process
GO:2000377Biological Processregulation of reactive oxygen species metabolic process
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MGDHAEMLHA APAAVYSGAG AGAAPHGGGW WNAAVPAPTC SADLAGFGTW SAALAASYDI  60
AVEGGKAKSA TTASSESPGN NSSVTFQEPA GVADPAGIGA AVHQQQPLDA GYTDWTHPYM  120
SSGTTLHGFL QDGHQDMSSR TEQQSPMAAS SMMNPSSNNL ALQGHHQEQD HHHQLLSSFG  180
SELLLSPTSP YGFQSSSLLR SLMEPTATAA KPALPGFQQY DQYGQQMGQQ ASPAAARFAP  240
GAIREPLQFT NDAPFWNSSA AGFGVPAAAV PDQARVRSVK PSPAPRAATL ALKTALEGVG  300
ESSSIITTKK KANGEPAFKK PRLETPSPLP TFKVRKEKLG DRITALQQLV SPFGKTDTAS  360
VLHETIEYIK FLHDQVGALS APYLKNGHQV HVPQLKSSSP EKSKDSHGEI SLKGRGLCLV  420
PISSTFAVAS EVPVDFWTPF GANFR*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0682561e-132BT068256.1 Zea mays full-length cDNA clone ZM_BFb0111F04 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822972.10.0transcription factor bHLH112-like
TrEMBLA0A2S3IAN20.0A0A2S3IAN2_9POAL; Uncharacterized protein
STRINGSi010139m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22163787
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61660.38e-51bHLH family protein