PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.G02392.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family HD-ZIP
Protein Properties Length: 786aa    MW: 84701.6 Da    PI: 5.644
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.G02392.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.31.7e-20105161157
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                     +++ +++t++q++e+e++F+++++p+ ++r+eL+++lgL+  qVk+WFqN+R+++k+
  Pahal.G02392.1 105 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKN 161
                     688999************************************************995 PP
2START202.41.9e-633025231206
                     HHHHHHHHHHHHHHHHC-TT-EEEE.....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEE CS
           START   1 elaeeaaqelvkkalaeepgWvkss.....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaet 81 
                     ela +a++elv++a+++ep+W         e +n++e+ + f+++ +      ++ea+r+s vv+m++a+lve+l+d++ q+ + +     +a t
  Pahal.G02392.1 302 ELAVAAMEELVRMAQLDEPLWNAPGidgssETLNEEEYSRMFSRGLGpkqygLKSEASRDSSVVIMTHANLVEILMDVN-QYATVFSsivsRAVT 395
                     57899****************98767778899**********888779*******************************.88888888888**** PP

                     EEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE- CS
           START  82 levissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwveh 169
                     lev+s+g      galq+m+ e+q++splvp R+++fvRy++q  +g+w++vdvS+ds ++ +    v +++++pSg+li++++ng+skvtwveh
  Pahal.G02392.1 396 LEVLSTGvagnynGALQVMSVEFQVPSPLVPtRESYFVRYCKQNADGTWAVVDVSLDSLRPGS----VLKCRRRPSGCLIQEMPNGYSKVTWVEH 486
                     *************************************************************97....8*************************** PP

                     EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 170 vdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                     v++++r++h++++ lv+sgla+ga++wv tl+rqce+
  Pahal.G02392.1 487 VEVDDRSVHNIYKLLVNSGLAFGARRWVGTLDRQCER 523
                     ***********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.0E-2286146IPR009057Homeodomain-like
SuperFamilySSF466895.43E-2090162IPR009057Homeodomain-like
PROSITE profilePS5007116.989102162IPR001356Homeobox domain
SMARTSM003896.2E-20103166IPR001356Homeobox domain
CDDcd000861.48E-19105163No hitNo description
PfamPF000464.3E-18105160IPR001356Homeobox domain
PROSITE patternPS000270137160IPR017970Homeobox, conserved site
Gene3DG3DSA:1.10.10.608.0E-4147189IPR009057Homeodomain-like
PROSITE profilePS5084841.413293526IPR002913START domain
SuperFamilySSF559611.22E-35294525No hitNo description
CDDcd088755.55E-123297522No hitNo description
SMARTSM002342.0E-59302523IPR002913START domain
PfamPF018521.8E-52303523IPR002913START domain
Gene3DG3DSA:3.30.530.201.3E-5364519IPR023393START-like domain
SuperFamilySSF559611.34E-24544775No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0009913Biological Processepidermal cell differentiation
GO:0048497Biological Processmaintenance of floral organ identity
GO:0048825Biological Processcotyledon development
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 786 aa     Download sequence    Send to blast
MMIPARHMPS MIGRSGAAAA YGSSSALSLG QPNLLDNHPQ LQQALQQQHL LDQIPATTAE  60
SGDNMMRGGR GSDLLGDEFE SKSGSENADG VSVDDQDPNQ PPSKKKRYHR HTQHQIQEME  120
AFFKECPHPD DKQRKELSRE LGLEPLQVKF WFQNKRTQMK NQHERQENSQ LRAENEKLRA  180
ENMRYKEALS SASCPNCGGP AALGEMSFDE HHLRIENARL HEEIDRISAI AAKYVGKPMV  240
SFPVLSSPLA AARASPLDIG VGAAAAYGGA TDIFGGVVAA GAAGELLRGA AQSDADKPMI  300
VELAVAAMEE LVRMAQLDEP LWNAPGIDGS SETLNEEEYS RMFSRGLGPK QYGLKSEASR  360
DSSVVIMTHA NLVEILMDVN QYATVFSSIV SRAVTLEVLS TGVAGNYNGA LQVMSVEFQV  420
PSPLVPTRES YFVRYCKQNA DGTWAVVDVS LDSLRPGSVL KCRRRPSGCL IQEMPNGYSK  480
VTWVEHVEVD DRSVHNIYKL LVNSGLAFGA RRWVGTLDRQ CERLASVMAS NIPTSDIGVI  540
TSSEGRKSML KLAERMVMSF CGGVTASAAH QWTTLSGSGA EDVRVMTRKS VDDPGRPPGI  600
VLNAATSFWL PVPPKRVFDF LRDESSRSEW DILSNGGIVQ EMAHIANGRD HGNCVSLLRV  660
NSTNSNQSNM LILQESCTDS SGSYVIYAPV DVVAMNVVLN GGDPDYVALL PSGFAILPDG  720
PARGNMQGEG GVGSGGSLLT VAFQILVDSV PTAKLSLGSV ATVNSLIACT VERIKAAVSG  780
ESNPQ*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0672590.0BT067259.1 Zea mays full-length cDNA clone ZM_BFb0357I11 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025823505.10.0homeobox-leucine zipper protein ROC2
SwissprotQ0J9X20.0ROC2_ORYSJ; Homeobox-leucine zipper protein ROC2
TrEMBLA0A2S3IAL00.0A0A2S3IAL0_9POAL; Uncharacterized protein
STRINGSi009409m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79938147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05230.40.0homeodomain GLABROUS 2
Publications ? help Back to Top
  1. Chou IT,Gasser CS
    Characterization of the cyclophilin gene family of Arabidopsis thaliana and phylogenetic analysis of known cyclophilin proteins.
    Plant Mol. Biol., 1997. 35(6): p. 873-92
    [PMID:9426607]