PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.G02259.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | NAC | ||||||||
Protein Properties | Length: 306aa MW: 33120.3 Da PI: 7.3003 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 160.8 | 5.3e-50 | 11 | 145 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk..leleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 lppGfrFhP+d+elv +yL +k++g ++ +vd++k ePw+Lp ++ + +ewyfFs +d+kyatg+r+nrat+sgyWkatgkd+++ Pahal.G02259.1 11 LPPGFRFHPRDDELVLDYLSRKLSGGGggAYGGIAMVDVDLNKREPWELPDEACVGGREWYFFSLHDRKYATGQRTNRATRSGYWKATGKDRPIS 105 79**********************999543333469999***********7666789************************************** PP NAM 94 sk.....kgelvglkktLvfykgrapkgektdWvmheyrl 128 + ++vg++ktLvfy+grap+g+kt+Wvmhe+r+ Pahal.G02259.1 106 ISgrragAAAVVGMRKTLVFYQGRAPRGSKTEWVMHEFRV 145 98555544445***************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.45E-56 | 3 | 172 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 55.336 | 11 | 172 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.7E-26 | 12 | 145 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 306 aa Download sequence Send to blast |
MSLISMMEAR LPPGFRFHPR DDELVLDYLS RKLSGGGGGA YGGIAMVDVD LNKREPWELP 60 DEACVGGREW YFFSLHDRKY ATGQRTNRAT RSGYWKATGK DRPISISGRR AGAAAVVGMR 120 KTLVFYQGRA PRGSKTEWVM HEFRVEGPAV AVAGRPCSPL KEDWVLCRVF YKSRTTTARP 180 ASTDEAASLS SELISLPLPH MPPADAYLAF DHGAAAAIDG YYQQQGDAGL PALHHQPTLL 240 PLDKGLSSFG DLLSSMVEGS DGGGSIAKAE LHQDWTEAAY AQQQQQQGGV PAHGPQAWNP 300 FLSSG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-48 | 6 | 172 | 12 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-48 | 6 | 172 | 12 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-48 | 6 | 172 | 12 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-48 | 6 | 172 | 12 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-48 | 6 | 172 | 15 | 168 | NAC domain-containing protein 19 |
3swm_B | 2e-48 | 6 | 172 | 15 | 168 | NAC domain-containing protein 19 |
3swm_C | 2e-48 | 6 | 172 | 15 | 168 | NAC domain-containing protein 19 |
3swm_D | 2e-48 | 6 | 172 | 15 | 168 | NAC domain-containing protein 19 |
3swp_A | 2e-48 | 6 | 172 | 15 | 168 | NAC domain-containing protein 19 |
3swp_B | 2e-48 | 6 | 172 | 15 | 168 | NAC domain-containing protein 19 |
3swp_C | 2e-48 | 6 | 172 | 15 | 168 | NAC domain-containing protein 19 |
3swp_D | 2e-48 | 6 | 172 | 15 | 168 | NAC domain-containing protein 19 |
4dul_A | 2e-48 | 6 | 172 | 12 | 165 | NAC domain-containing protein 19 |
4dul_B | 2e-48 | 6 | 172 | 12 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU963031 | 0.0 | EU963031.1 Zea mays clone 247548 NAC domain-containing protein 21/22 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025824710.1 | 0.0 | NAC domain-containing protein 21/22-like | ||||
TrEMBL | A0A2S3IAF0 | 0.0 | A0A2S3IAF0_9POAL; Uncharacterized protein | ||||
STRING | Si010680m | 1e-178 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1012 | 37 | 138 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G56010.2 | 9e-67 | NAC domain containing protein 1 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.G02259.1 |