PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.G02166.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 465aa MW: 51592.7 Da PI: 4.9267 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 34.2 | 4.4e-11 | 264 | 310 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +a+ + Er RR+++N ++ +Lr l P++ +K++ a+i+ A+eYI +L Pahal.G02166.2 264 KANFATERERREQLNVKYRTLRMLFPNP-----TKNDRASIVGDAIEYIDEL 310 57899***********************.....9***************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.31E-11 | 261 | 323 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 13.363 | 261 | 310 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.11E-8 | 262 | 315 | No hit | No description |
Pfam | PF00010 | 3.4E-8 | 264 | 310 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.0E-7 | 267 | 316 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.9E-9 | 268 | 323 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009555 | Biological Process | pollen development | ||||
GO:0048658 | Biological Process | anther wall tapetum development | ||||
GO:0052543 | Biological Process | callose deposition in cell wall | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 465 aa Download sequence Send to blast |
MIAGGGYFES SHDQCLMAGS LIHDSSQIPK GNDDTSIELQ KFKVPSFSTE ALSRPTNFSS 60 EDVGGTNLLQ HQLGIDLEQE APPGETTSWD PSVCTIQDQI IKHQFGEYSE NMLVEPEIQQ 120 YDAALYPNGA YTPAPDLLNL LRINVASAFP AATSVFGDAM LNGSNYLDLN GELTGVAAIP 180 DNGLMFTGDS SVHLGYHATQ PHLANDICHS LPQNYGLFPS EDEREVMIGA GSVGDLFQEI 240 DDRQFDSVLE CRRGKGEFGK GKVKANFATE RERREQLNVK YRTLRMLFPN PTKNDRASIV 300 GDAIEYIDEL NRTVKELKIL VEQKKHGNNR EKRIKLDHQA AADGESSSMK PIRDDQDNQL 360 NGSIRSSWVQ RRSKECHVDV RIVDDEVNIK LTEKKKDNSL FHAAKVLDEF QLDLIHAVGG 420 IIGDHHIFMF NTKVPEGSSV YACPVAKRLL EAVDAQHQTY NIFN* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the regulation of tapetum programmed cell death (PCD) and degradation during male reproductive development (PubMed:23519457, PubMed:23385589). Interacts with TDR and promote tapetal PCD by regulating the expression of RTS, and the two lipid-transfer proteins C4 and C6, which function in microspore development (PubMed:23519457). Acts downstream from and interacts with TDR in the regulation of tapetal PCD. Regulates directly the aspartic protease AP25 and AP37 during tapetal PCD (PubMed:23385589). May not target the cysteine protease CP1 (PubMed:23519457, PubMed:23385589). {ECO:0000269|PubMed:23385589, ECO:0000269|PubMed:23519457}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025826194.1 | 0.0 | transcription factor EAT1-like | ||||
Swissprot | Q7X8R0 | 0.0 | EAT1_ORYSJ; Transcription factor EAT1 | ||||
TrEMBL | A0A2S3I9X5 | 0.0 | A0A2S3I9X5_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Gb00794.1.p | 0.0 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31210.1 | 1e-58 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Pahal.G02166.2 |