PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.G02155.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 476aa    MW: 49516.3 Da    PI: 5.3351
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.G02155.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.67.9e-31232290259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY++eHnh+
  Pahal.G02155.1 232 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRTDPNMLVITYTSEHNHP 290
                     699************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081132.925226292IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.3E-30229292IPR003657WRKY domain
SuperFamilySSF1182903.53E-26229292IPR003657WRKY domain
SMARTSM007741.4E-37231291IPR003657WRKY domain
PfamPF031061.0E-25233290IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    Send to blast
MCDYFLQRME GDQAGGDLTD IVRAGGGAMP GNAEVPSTAA EWQLQGEPML FPPPPSSSDG  60
CAGGAGADVF GDPFAALGDP FSSDYASGVD FLDAMPDAMA KVGFDTAVGG GSGCGGGGGG  120
GGQLLDMSRK PLLPRGVQMP SVGVLAPRVL PSPLSPRAIR PYPALAGDMV KLGITAGQVA  180
GCAIDAAVVG MQMSSPRAAG GIKRRKNQAR KVVCIPAPTA AGGRPTGEVV PSDLWAWRKY  240
GQKPIKGSPY PRGYYRCSSS KGCSARKQVE RSRTDPNMLV ITYTSEHNHP WPTQRNALAG  300
STRNHHGKNS GSGSSGSKSS QNERQQQPNV KEEPKDPATT TTTSTITTTT STSPAAAVKE  360
ETLAGSSEAL GRAMDAAVGD HSMELMDQVF SESYKPMIPE AGQSDDFFSD LAELESDPMS  420
LIFSKEYMEA KPAASGGDRA QEKAITKDLD PFDMLDWSTT TSSASGSSFE QGKRG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B5e-25206293280Disease resistance protein RRS1
5w3x_D5e-25206293280Disease resistance protein RRS1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825027.10.0probable WRKY transcription factor 35
TrEMBLA0A2T7CZC80.0A0A2T7CZC8_9POAL; Uncharacterized protein
STRINGPavir.Gb00758.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25923888
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.12e-67WRKY DNA-binding protein 35