PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.G02141.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 367aa    MW: 38873.6 Da    PI: 4.6398
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.G02141.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.61e-161663148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd +l+ +++++G  +W++ ++  g+ R++k+c++rw +yl
   Pahal.G02141.1 16 KGSWTPEEDMRLIAYIQKYGHANWRALPKQAGLLRCGKSCRLRWINYL 63
                     799*****************************99************97 PP
2Myb_DNA-binding53.36.2e-1769114148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T+eE+e +++++ +lG++ W++Ia++++ gRt++++k+ w+++l
   Pahal.G02141.1  69 RGNFTAEEEETIIKLHGMLGNK-WSKIAACLP-GRTDNEIKNVWNTHL 114
                      89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.1951163IPR017930Myb domain
SuperFamilySSF466891.61E-3013110IPR009057Homeodomain-like
SMARTSM007172.3E-131565IPR001005SANT/Myb domain
PfamPF002492.8E-151663IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.4E-241770IPR009057Homeodomain-like
CDDcd001672.86E-111863No hitNo description
PROSITE profilePS5129424.83464118IPR017930Myb domain
SMARTSM007179.9E-1568116IPR001005SANT/Myb domain
PfamPF002493.9E-1569114IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-2671117IPR009057Homeodomain-like
CDDcd001672.19E-1171114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MGKGRAPCCA KVGLNKGSWT PEEDMRLIAY IQKYGHANWR ALPKQAGLLR CGKSCRLRWI  60
NYLRPDLKRG NFTAEEEETI IKLHGMLGNK WSKIAACLPG RTDNEIKNVW NTHLKKRVSP  120
AGEERGAGSK KKKKKAAGAG EPAAPSPSPS SSTTTATTNC SSGDSGEQQS DASKVPDELG  180
LEELEMIPML DDPAFDFDML VDAAPEPYCP AASVSVPTSP CASSTSPPAP ARPGVDELLD  240
LPEIDIDHEL WSIIDGDGGG ACTVVSAAGT PAPCQSNATE PNAASTTSQG AEWWLEDLEK  300
ELGLWGPIED YQYPVGPQGP IAHPGTLPAM VDDPVSCYFQ AGPAPATLQQ DPAYSAVVTS  360
SNQLGF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C4e-29141182105C-Myb DNA-Binding Domain
1msf_C4e-29141182105C-Myb DNA-Binding Domain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1114134KKRVSPAGEERGAGSKKKKKK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that regulates positively genes involved in anthocyanin biosynthesis such as A1. {ECO:0000269|PubMed:7920701}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0701450.0BT070145.1 Zea mays full-length cDNA clone ZM_BFc0138F01 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025824709.10.0myb-related protein Zm1-like
SwissprotP200241e-107MYB1_MAIZE; Myb-related protein Zm1
TrEMBLA0A2S3I9V40.0A0A2S3I9V4_9POAL; Uncharacterized protein
STRINGPavir.Ga00752.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21543798
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79180.16e-70myb domain protein 63
Publications ? help Back to Top
  1. Franken P,Schrell S,Peterson PA,Saedler H,Wienand U
    Molecular analysis of protein domain function encoded by the myb-homologous maize genes C1, Zm 1 and Zm 38.
    Plant J., 1994. 6(1): p. 21-30
    [PMID:7920701]