PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.G02123.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 331aa    MW: 35176.6 Da    PI: 6.6326
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.G02123.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH421.7e-1388139155
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +r++h ++Er+RR+++N+ ++ Lr+l+P++   +  + + a+i+  A++++k+L+
  Pahal.G02123.1  88 QRMTHIAVERNRRRQMNEYLAVLRSLMPES---YVHRSDQASIVSGAIDFVKELE 139
                     79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.16E-1486143No hitNo description
SuperFamilySSF474591.96E-1786155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.40287138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.3E-1588154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.6E-1188139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.7E-1193144IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MTLEALCAPS TSSDVLVYDT FNAAAAACAA ASPGTGSFLF GNAPAVEPFP APAAPPDAEG  60
ENRVQQQGRR KRRRRQRTVK NAEDAESQRM THIAVERNRR RQMNEYLAVL RSLMPESYVH  120
RSDQASIVSG AIDFVKELEQ QVQSLEAQKL ALQPQRGGTA SERDAARAPP RDPVAASSSS  180
ASVTGEAAER PPFARFFRYP QYAWRHTPPQ EDGAAAVGAE EASRASAVAD VEVSVVVDAH  240
ASLRVMARRR PGQLLKMVAG MQALGLAVLH LNVTAAPGEL ALYTLNLKVE EGCGLTTAED  300
IAAAAHHVLC IIDAEAAQRL LAPGAGQPDL *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16775GRRKRRRRQ
26874RRKRRRR
36973RKRRR
46976RKRRRRQR
58899RMTHIAVERNRR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0613231e-102BT061323.1 Zea mays full-length cDNA clone ZM_BFb0135D07 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825670.10.0transcription factor bHLH96-like isoform X1
TrEMBLA0A2S3I9Y30.0A0A2S3I9Y3_9POAL; Uncharacterized protein
STRINGPavir.J15346.1.p1e-140(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37123678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.16e-49bHLH family protein