PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.G02071.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | MYB_related | ||||||||
Protein Properties | Length: 453aa MW: 49415.3 Da PI: 7.5354 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.2 | 2.9e-16 | 61 | 105 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT++E++l+++a +q+G W+ I +++g +t+ q++s+ qk+ Pahal.G02071.1 61 REKWTEDEHKLFLEALQQHGRA-WRHIQEHIG-SKTAVQIRSHAQKF 105 789*****************88.*********.************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 8.22E-15 | 55 | 108 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 19.873 | 56 | 110 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-9 | 58 | 111 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 7.2E-15 | 59 | 108 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 4.5E-13 | 60 | 108 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.4E-14 | 61 | 104 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.72E-10 | 63 | 106 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 453 aa Download sequence Send to blast |
MARFQEIKVR NDQRPAADRV DHGDFIDHLL KKTLNSGATD DLPEGARAPK ARKPYTISKQ 60 REKWTEDEHK LFLEALQQHG RAWRHIQEHI GSKTAVQIRS HAQKFFSKVI RESSGDSNSI 120 AAPPQIHIPP PRPKRKPAHP YPRKLGNSLC KDASTIKQLE KPQLKIQLLC EQENCSPKSV 180 LTTAQIGSET MATEGSGSPA SSVYMEEKCL TPSTSVGEVA LSKDSTTSNG AACGIPEGPV 240 LRLFGKRVVV NNLHQQPNSN TGNLQHAADM ELDASAETPT SGTGKFSSHG AEEAKTWSPW 300 LTGTQQFIYY LPQGEVLSVH SACQFLSYSN GSISYGVLSP QTVASNKQQH QPSQAADCKF 360 TRAEGSWAES ITTSCSVPET TTQNSDSIES TQVNNDDDDE VIPVPGSRKC LSTVPTYLRG 420 FVPYKKCTAQ SKMLQSQAPG EEADGDMTRL CL* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025824173.1 | 0.0 | uncharacterized protein LOC112899782 | ||||
TrEMBL | A0A2S3I9P7 | 0.0 | A0A2S3I9P7_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Gb00859.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2722 | 36 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G17300.1 | 1e-31 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | Pahal.G02071.1 |