PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.G02071.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB_related
Protein Properties Length: 453aa    MW: 49415.3 Da    PI: 7.5354
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.G02071.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.22.9e-1661105147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r +WT++E++l+++a +q+G   W+ I +++g  +t+ q++s+ qk+
   Pahal.G02071.1  61 REKWTEDEHKLFLEALQQHGRA-WRHIQEHIG-SKTAVQIRSHAQKF 105
                      789*****************88.*********.************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.22E-1555108IPR009057Homeodomain-like
PROSITE profilePS5129419.87356110IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.2E-958111IPR009057Homeodomain-like
TIGRFAMsTIGR015577.2E-1559108IPR006447Myb domain, plants
SMARTSM007174.5E-1360108IPR001005SANT/Myb domain
PfamPF002497.4E-1461104IPR001005SANT/Myb domain
CDDcd001674.72E-1063106No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
MARFQEIKVR NDQRPAADRV DHGDFIDHLL KKTLNSGATD DLPEGARAPK ARKPYTISKQ  60
REKWTEDEHK LFLEALQQHG RAWRHIQEHI GSKTAVQIRS HAQKFFSKVI RESSGDSNSI  120
AAPPQIHIPP PRPKRKPAHP YPRKLGNSLC KDASTIKQLE KPQLKIQLLC EQENCSPKSV  180
LTTAQIGSET MATEGSGSPA SSVYMEEKCL TPSTSVGEVA LSKDSTTSNG AACGIPEGPV  240
LRLFGKRVVV NNLHQQPNSN TGNLQHAADM ELDASAETPT SGTGKFSSHG AEEAKTWSPW  300
LTGTQQFIYY LPQGEVLSVH SACQFLSYSN GSISYGVLSP QTVASNKQQH QPSQAADCKF  360
TRAEGSWAES ITTSCSVPET TTQNSDSIES TQVNNDDDDE VIPVPGSRKC LSTVPTYLRG  420
FVPYKKCTAQ SKMLQSQAPG EEADGDMTRL CL*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025824173.10.0uncharacterized protein LOC112899782
TrEMBLA0A2S3I9P70.0A0A2S3I9P7_9POAL; Uncharacterized protein
STRINGPavir.Gb00859.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27223686
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17300.11e-31MYB_related family protein