PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.G01979.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family HD-ZIP
Protein Properties Length: 791aa    MW: 85202.7 Da    PI: 6.277
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.G01979.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox67.12.4e-2196152157
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                     +++ +++t++q+++Le++F+++++p++++r+eL++ lgL+ rqVk+WFqNrR+++k+
  Pahal.G01979.1  96 KKRYHRHTPHQIHQLEAMFKECPHPDEKQRAELSNLLGLQPRQVKFWFQNRRTQMKN 152
                     678899************************************************995 PP
2START174.56.4e-553055312206
                     HHHHHHHHHHHHHHHC-TT-EEEE........EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EE CS
           START   2 laeeaaqelvkkalaeepgWvkss........esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....ka 79 
                     la +a++elvk+a+ +ep+W  s+        e +n +e+ ++f +  +     + +ea+r++g+v+ ++a lve ++d + +W+ ++      a
  Pahal.G01979.1 305 LAMRAMDELVKMAQMNEPLWIPSVsspssatmEALNWKEYSKTFLPCVGvkpigFVSEASREFGIVTIDSAALVEVFMDER-RWSDMFScivaTA 398
                     6789****************99998878888888888888888877554999*****************************.************* PP

                     EEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEE CS
           START  80 etlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwv 167
                     +t+e is g      gal lm+aelq+lsplvp R+++f+R++ ql +g+w++vdvSvd  +  +     + +++lpSg+++++++ng +kvtwv
  Pahal.G01979.1 399 STIEEISAGvagsrdGALLLMQAELQVLSPLVPrREVTFLRFCNQLAEGVWAVVDVSVDGLERDQCLVTNMNCRRLPSGCVVQDTPNG-CKVTWV 492
                     ***********************************************************98887778889999***************.****** PP

                     E-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 168 ehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                     eh+++ ++++h+l+r+l++sgla ga +w+atlqrqce+
  Pahal.G01979.1 493 EHTEYHEASVHQLYRPLLRSGLALGAGRWLATLQRQCEC 531
                     *************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-2382153IPR009057Homeodomain-like
SuperFamilySSF466891.38E-2184153IPR009057Homeodomain-like
PROSITE profilePS5007117.97793153IPR001356Homeobox domain
SMARTSM003894.7E-2294157IPR001356Homeobox domain
CDDcd000862.28E-2095153No hitNo description
PfamPF000468.1E-1996151IPR001356Homeobox domain
PROSITE patternPS000270128151IPR017970Homeobox, conserved site
PROSITE profilePS5084843.544295534IPR002913START domain
SuperFamilySSF559614.07E-30297531No hitNo description
CDDcd088758.22E-105299530No hitNo description
SMARTSM002349.4E-44304531IPR002913START domain
PfamPF018522.6E-47305531IPR002913START domain
SuperFamilySSF559611.98E-17556775No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 791 aa     Download sequence    Send to blast
MSFGDLLGGV GDAAGVPYTP CGVFASSPAL SLAVADAGRR RDGSGERAAG GGGNAKDAPE  60
AKNDSRSPMS GHLDVVLAGG GEDDEDGEDG NPRKRKKRYH RHTPHQIHQL EAMFKECPHP  120
DEKQRAELSN LLGLQPRQVK FWFQNRRTQM KNQLERHENA LLKQENDKLR AENLSIRGAM  180
RDAACSGCGG PALLGEMSLE EHHLRLENAR LRDELTRVCA LAAKFIGKPL SPMALPLVQQ  240
PHPMPDSSLD LAATCVGSVP PSTMPFSTIS ELAGSVSSQM GTVISPVVTT PLAMGSADKS  300
MFVQLAMRAM DELVKMAQMN EPLWIPSVSS PSSATMEALN WKEYSKTFLP CVGVKPIGFV  360
SEASREFGIV TIDSAALVEV FMDERRWSDM FSCIVATAST IEEISAGVAG SRDGALLLMQ  420
AELQVLSPLV PRREVTFLRF CNQLAEGVWA VVDVSVDGLE RDQCLVTNMN CRRLPSGCVV  480
QDTPNGCKVT WVEHTEYHEA SVHQLYRPLL RSGLALGAGR WLATLQRQCE CLAILMSSVA  540
VPEHDSSAVA LEAQGKRSLL RLAQRMMENF CAGVSASSAE WNKLDGLTGS MRKDVRVMVR  600
KSVDEPGVPP GVVLSAATAV WMPVTPERLF NFLRNEGMRA EWDILSNGGP MQQMLRIAKG  660
QLDGNSVTLL RADPTNTHLN SILILQETCT DKSGAMVVYA PVDFPAMQLV MGGGDSTYVA  720
LLPSGFAILP GGSSAGGVGH KTSGSLLTVA FQILVNSQPT AKLTLESVDT VYNLISCTIE  780
KIKASLHCEV *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19197PRKRKKR
29296RKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025823430.10.0homeobox-leucine zipper protein ROC4-like
SwissprotQ7Y0V90.0ROC4_ORYSJ; Homeobox-leucine zipper protein ROC4
TrEMBLA0A2S3IA780.0A0A2S3IA78_9POAL; Uncharacterized protein
STRINGPavir.Ga00993.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP120337116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61150.10.0homeodomain GLABROUS 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Wei J, et al.
    GL2-type homeobox gene Roc4 in rice promotes flowering time preferentially under long days by repressing Ghd7.
    Plant Sci., 2016. 252: p. 133-143
    [PMID:27717449]
  3. Chou IT,Gasser CS
    Characterization of the cyclophilin gene family of Arabidopsis thaliana and phylogenetic analysis of known cyclophilin proteins.
    Plant Mol. Biol., 1997. 35(6): p. 873-92
    [PMID:9426607]