PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.G01970.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

Dof

Protein Properties

Length: 371aa MW: 36941.9 Da PI: 8.6653

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.G01970.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.1	2.3e-39	73	134	2	63
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 kekal+cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rknk+sss Pahal.G01970.1 73 KEKALNCPRCNSTNTKFCYYNNYSLQQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSSS 134 7899******************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-31	69	131	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.4E-33	75	131	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.059	77	131	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	79	115	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 371 aa Download sequence Send to blast
MDAAHWQQSL GLVKPMEEML MAANAGAAAN TSQGSNPNPP APSSVAGGGA LRAPAPPAVA 60 GAGSTERRAR PQKEKALNCP RCNSTNTKFC YYNNYSLQQP RYFCKTCRRY WTEGGSLRNV 120 PVGGGSRKNK RSSSSSASAS TSASVTSSSM TSTAGAASKN PKLAHEGAQD LNLAFPHHGG 180 LHAPEFAAFP SLESSNVCNS GGAMAGNGRG GGGGAGPAVG ALSAMELLRS SGCYMPLQMP 240 MPMPGDYAAA GFALGEFRAP PPPPPPSQSV LGFSLDAHGP GPGAAASGYG SSAGLPENAG 300 RLLFPFEDLK PPVSSGGGGV AAGASGGAGD GNSGHPQFDH NKEQGGGGPS AGHDTPGFWN 360 GMIGGSGASW *

Sequence ? help Back to Top

Protein Sequence Length: 371 aa Download sequence Send to blast

MDAAHWQQSL GLVKPMEEML MAANAGAAAN TSQGSNPNPP APSSVAGGGA LRAPAPPAVA  60
GAGSTERRAR PQKEKALNCP RCNSTNTKFC YYNNYSLQQP RYFCKTCRRY WTEGGSLRNV  120
PVGGGSRKNK RSSSSSASAS TSASVTSSSM TSTAGAASKN PKLAHEGAQD LNLAFPHHGG  180
LHAPEFAAFP SLESSNVCNS GGAMAGNGRG GGGGAGPAVG ALSAMELLRS SGCYMPLQMP  240
MPMPGDYAAA GFALGEFRAP PPPPPPSQSV LGFSLDAHGP GPGAAASGYG SSAGLPENAG  300
RLLFPFEDLK PPVSSGGGGV AAGASGGAGD GNSGHPQFDH NKEQGGGGPS AGHDTPGFWN  360
GMIGGSGASW *

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may transactivate seed storage protein genes in developing seeds. {ECO:0000250\|UniProtKB:Q6K537}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC582413	0.0	KC582413.1 Sorghum bicolor dof20 protein (dof20) gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025824657.1	0.0	dof zinc finger protein 1-like isoform X2
Swissprot	Q9SXG8	1e-134	DOF1_ORYSJ; Dof zinc finger protein 1
TrEMBL	A0A2S3IA67	0.0	A0A2S3IA67_9POAL; Uncharacterized protein
STRING	Pavir.Gb01040.1.p	1e-174	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2369	34	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24060.1	7e-43	Dof family protein

Link Out ? help Back to Top
Phytozome	Pahal.G01970.1

Publications ? help Back to Top
Washio K Identification of Dof proteins with implication in the gibberellin-regulated expression of a peptidase gene following the germination of rice grains. Biochim. Biophys. Acta, 2001. 1520(1): p. 54-62 [PMID:11470159]