PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.G01955.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | C2H2 | ||||||||
Protein Properties | Length: 596aa MW: 61567.6 Da PI: 8.5679 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.2 | 1.4e-05 | 87 | 109 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k F r nL+ H r H Pahal.G01955.2 87 FVCEVCNKGFQREQNLQLHRRGH 109 89*******************88 PP | |||||||
2 | zf-C2H2 | 11.6 | 0.00088 | 164 | 186 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H + + Pahal.G01955.2 164 WKCDKCSKRYAVQSDWKAHSKIC 186 58*****************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.55E-7 | 86 | 109 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 8.2E-6 | 86 | 109 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 11.094 | 87 | 109 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0041 | 87 | 109 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF12171 | 3.9E-5 | 87 | 109 | IPR022755 | Zinc finger, double-stranded RNA binding |
PROSITE pattern | PS00028 | 0 | 89 | 109 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 4.0E-4 | 152 | 185 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 2.55E-7 | 159 | 184 | No hit | No description |
SMART | SM00355 | 140 | 164 | 184 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 596 aa Download sequence Send to blast |
MASNSSAAAF FGIRDGDQQD QIKPLISPQQ QQLAAALPGA ASNAPASGQG APTAAAQPPP 60 KKKRTLPDPD AEVIALSPKT LMATNRFVCE VCNKGFQREQ NLQLHRRGHN LPWKLKQKNP 120 LQAQRRRVYL CPEPTCVHHD PSRALGDLTG IKKHFCRKHG EKKWKCDKCS KRYAVQSDWK 180 AHSKICGTRE YRCDCGTLFS RRDSFITHRA FCDALAQESA RLPPTSLSSL TGHLYGATNA 240 GNMALSLSQV GSHLNSTLQD GHHHHHHHPS PELLRLGAAA GGGGSIAARL DHLLSPTSGA 300 SAFRPAPQAP PSSAAFFLNV AGQDFGDDAG NGPHSFMQGK AFHGLMQLPD LQGNGAGGPG 360 GSAPGLFNLG FFANNGNSSG SSHEHASQGL MNNDQFSGGA GGGGGGGGGS EASAAGIFGG 420 NFVGGGDHVP TPGLYGGDQA TMLPQMSATA LLQKAAQMGA TSSPNGAASM FRGFVGSSPH 480 GRPATPHMEQ SEANLNDLMN SLAGGGVSAA GMFGGSNGGG GGAGMFDPRQ LCDMEHEVKF 540 GQGGGDMTRD FLGVGGGGIV RGISTPRADH QSSSDMSSLE AEMKSASSFN GGRMP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 1e-34 | 160 | 229 | 3 | 70 | Zinc finger protein JACKDAW |
5b3h_F | 1e-34 | 160 | 229 | 3 | 70 | Zinc finger protein JACKDAW |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 396 | 409 | SGGAGGGGGGGGGS |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY754866 | 0.0 | AY754866.1 Zea mays INDETERMINATE-related protein 9 mRNA, complete cds. | |||
GenBank | BT064120 | 0.0 | BT064120.1 Zea mays full-length cDNA clone ZM_BFc0139A11 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025824078.1 | 0.0 | protein indeterminate-domain 5, chloroplastic-like | ||||
Refseq | XP_025824079.1 | 0.0 | protein indeterminate-domain 5, chloroplastic-like | ||||
Refseq | XP_025824080.1 | 0.0 | protein indeterminate-domain 5, chloroplastic-like | ||||
Refseq | XP_025824082.1 | 0.0 | protein indeterminate-domain 5, chloroplastic-like | ||||
Refseq | XP_025824083.1 | 0.0 | protein indeterminate-domain 5, chloroplastic-like | ||||
TrEMBL | A0A2S3I9D0 | 0.0 | A0A2S3I9D0_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Gb01057.1.p | 0.0 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G02670.1 | 1e-105 | indeterminate(ID)-domain 12 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.G01955.2 |