PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.G01955.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 596aa    MW: 61567.6 Da    PI: 8.5679
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.G01955.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.21.4e-0587109123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C+ C+k F r  nL+ H r H
  Pahal.G01955.1  87 FVCEVCNKGFQREQNLQLHRRGH 109
                     89*******************88 PP
2zf-C2H211.60.00088164186123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kC +C+k++  +s+ k H + +
  Pahal.G01955.1 164 WKCDKCSKRYAVQSDWKAHSKIC 186
                     58*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.55E-786109No hitNo description
Gene3DG3DSA:3.30.160.608.2E-686109IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.09487109IPR007087Zinc finger, C2H2
SMARTSM003550.004187109IPR015880Zinc finger, C2H2-like
PfamPF121713.9E-587109IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS00028089109IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.0E-4152185IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.55E-7159184No hitNo description
SMARTSM00355140164184IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 596 aa     Download sequence    Send to blast
MASNSSAAAF FGIRDGDQQD QIKPLISPQQ QQLAAALPGA ASNAPASGQG APTAAAQPPP  60
KKKRTLPDPD AEVIALSPKT LMATNRFVCE VCNKGFQREQ NLQLHRRGHN LPWKLKQKNP  120
LQAQRRRVYL CPEPTCVHHD PSRALGDLTG IKKHFCRKHG EKKWKCDKCS KRYAVQSDWK  180
AHSKICGTRE YRCDCGTLFS RRDSFITHRA FCDALAQESA RLPPTSLSSL TGHLYGATNA  240
GNMALSLSQV GSHLNSTLQD GHHHHHHHPS PELLRLGAAA GGGGSIAARL DHLLSPTSGA  300
SAFRPAPQAP PSSAAFFLNV AGQDFGDDAG NGPHSFMQGK AFHGLMQLPD LQGNGAGGPG  360
GSAPGLFNLG FFANNGNSSG SSHEHASQGL MNNDQFSGGA GGGGGGGGGS EASAAGIFGG  420
NFVGGGDHVP TPGLYGGDQA TMLPQMSATA LLQKAAQMGA TSSPNGAASM FRGFVGSSPH  480
GRPATPHMEQ SEANLNDLMN SLAGGGVSAA GMFGGSNGGG GGAGMFDPRQ LCDMEHEVKF  540
GQGGGDMTRD FLGVGGGGIV RGISTPRADH QSSSDMSSLE AEMKSASSFN GGRMP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-34160229370Zinc finger protein JACKDAW
5b3h_F1e-34160229370Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1396409SGGAGGGGGGGGGS
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY7548660.0AY754866.1 Zea mays INDETERMINATE-related protein 9 mRNA, complete cds.
GenBankBT0641200.0BT064120.1 Zea mays full-length cDNA clone ZM_BFc0139A11 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025824078.10.0protein indeterminate-domain 5, chloroplastic-like
RefseqXP_025824079.10.0protein indeterminate-domain 5, chloroplastic-like
RefseqXP_025824080.10.0protein indeterminate-domain 5, chloroplastic-like
RefseqXP_025824082.10.0protein indeterminate-domain 5, chloroplastic-like
RefseqXP_025824083.10.0protein indeterminate-domain 5, chloroplastic-like
TrEMBLA0A2S3I9D00.0A0A2S3I9D0_9POAL; Uncharacterized protein
STRINGPavir.Gb01057.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17333798
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02670.11e-105indeterminate(ID)-domain 12