PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.G01945.2

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

Nin-like

Protein Properties

Length: 334aa MW: 37934.5 Da PI: 9.8792

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.G01945.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	83.3	2.3e-26	203	252	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++i+l ++++yF+lpi++A+k+L++++++LKr+CR+yGI+RWPhRkiksl Pahal.G01945.2 203 DSITLVEIAQYFHLPIREASKTLKIGVSILKRKCRKYGIPRWPHRKIKSL 252 689*********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	19.6	187	272	IPR003035	RWP-RK domain
Pfam	PF02042	1.5E-21	204	252	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 334 aa Download sequence Send to blast
MDMDAAVSTL TALSVFASTV EHAAFRSVHG YRVIGRKDGK WVRWERWVER QFVLSLSVPP 60 CREVAVPAAS PRILLAGWHG RPVFHEGQAV GTWRCIVAFD SVAAVAPSSP PPPVLSPLVN 120 PQLECLPNLY RDLQKVFQFQ KVEKVPQLVR RDAKQQPIRS GEQEKTSDEA DSSGSDSDGD 180 PQSDKELAPT VQKQPRANRK HIDSITLVEI AQYFHLPIRE ASKTLKIGVS ILKRKCRKYG 240 IPRWPHRKIK SLESLINDLE YVLDDDSGED AQQELQKIEE EKQAAVIKAL TKRKKMLESE 300 KEIIQQKPAL DLMTETKQFR EDVFKRRYRA RRV*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025825577.1	0.0	protein RKD5
TrEMBL	A0A2S3I9D6	0.0	A0A2S3I9D6_9POAL; Uncharacterized protein
STRING	Pavir.Ga01021.1.p	0.0	(Panicum virgatum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35590.1	1e-38	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	Pahal.G01945.2