PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.G01945.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

Nin-like

Protein Properties

Length: 348aa MW: 39820.5 Da PI: 10.2512

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.G01945.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	83.2	2.4e-26	217	266	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++i+l ++++yF+lpi++A+k+L++++++LKr+CR+yGI+RWPhRkiksl Pahal.G01945.1 217 DSITLVEIAQYFHLPIREASKTLKIGVSILKRKCRKYGIPRWPHRKIKSL 266 689*********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	19.6	201	286	IPR003035	RWP-RK domain
Pfam	PF02042	1.6E-21	218	266	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 348 aa Download sequence Send to blast
MRLSRHSSKQ AEENRGPRGG SGLSGSEQWK WTREEHTAFR SVHGYRVIGR KDGKWVRWER 60 WVERQFVLSL SVPPCREVAV PAASPRILLA GWHGRPVFHE GQAVGTWRCI VAFDSVAAVA 120 PSSPPPPVLS PLVNPQLECL PNLYRDLQKV FQFQKVEKVP QLVRRDAKQQ PIRSGEQEKT 180 SDEADSSGSD SDGDPQSDKE LAPTVQKQPR ANRKHIDSIT LVEIAQYFHL PIREASKTLK 240 IGVSILKRKC RKYGIPRWPH RKIKSLESLI NDLEYVLDDD SGEDAQQELQ KIEEEKQAAV 300 IKALTKRKKM LESEKEIIQQ KPALDLMTET KQFREDVFKR RYRARRV*

Sequence ? help Back to Top

Protein Sequence Length: 348 aa Download sequence Send to blast

MRLSRHSSKQ AEENRGPRGG SGLSGSEQWK WTREEHTAFR SVHGYRVIGR KDGKWVRWER  60
WVERQFVLSL SVPPCREVAV PAASPRILLA GWHGRPVFHE GQAVGTWRCI VAFDSVAAVA  120
PSSPPPPVLS PLVNPQLECL PNLYRDLQKV FQFQKVEKVP QLVRRDAKQQ PIRSGEQEKT  180
SDEADSSGSD SDGDPQSDKE LAPTVQKQPR ANRKHIDSIT LVEIAQYFHL PIREASKTLK  240
IGVSILKRKC RKYGIPRWPH RKIKSLESLI NDLEYVLDDD SGEDAQQELQ KIEEEKQAAV  300
IKALTKRKKM LESEKEIIQQ KPALDLMTET KQFREDVFKR RYRARRV*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025825577.1	0.0	protein RKD5
TrEMBL	A0A2S3I9D6	0.0	A0A2S3I9D6_9POAL; Uncharacterized protein
STRING	Pavir.Ga01021.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP10673	31	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35590.1	8e-35	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	Pahal.G01945.1