PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.G01894.7

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bHLH

Protein Properties

Length: 366aa MW: 39971.1 Da PI: 5.5173

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.G01894.7	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	43.2	7e-14	173	220	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 r+h + Er+RR+++N+ f L++l+P+ K++Ka+iL +++ Y+k+Lq Pahal.G01894.7 173 RNHVMSERKRREKLNEMFLVLKSLVPSiY------KVNKASILAETIAYLKELQ 220 5799*********************77......****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.497	170	219	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.9E-11	173	220	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	9.55E-18	173	236	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.02E-15	173	224	No hit	No description
Gene3D	G3DSA:4.10.280.10	3.3E-17	174	232	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.7E-15	176	225	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 366 aa Download sequence Send to blast
MQFPACSQEP SSSPSANETG KAADIIVFED LDHNAMEEMI AGGQELDESE SLSNATLEHI 60 TKEIDEFYSL CEEMDVQPLE DCWIMDGSFE VPSPPQPAAG ASTHDAATSS TPVRGSRATS 120 FTAWTRSASD SGEVAVLVIE EPQKLLKKVV AGGAWASNGG GDTTRTAKES GIRNHVMSER 180 KRREKLNEMF LVLKSLVPSI YKVNKASILA ETIAYLKELQ RRVHELESSR EPISRPSETR 240 RLTKRHDDGS ARKKVSAGSK RKGSELGGDM VRDEHPWALS KDGASNVTVT VSDKDVLVEV 300 QCRWEELLMT RVFDAIKNLH LDVLSVQASA PDGFMGLKIR AQFASSAAVV PWMISEALRK 360 AIGKR*

Sequence ? help Back to Top

Protein Sequence Length: 366 aa Download sequence Send to blast

MQFPACSQEP SSSPSANETG KAADIIVFED LDHNAMEEMI AGGQELDESE SLSNATLEHI  60
TKEIDEFYSL CEEMDVQPLE DCWIMDGSFE VPSPPQPAAG ASTHDAATSS TPVRGSRATS  120
FTAWTRSASD SGEVAVLVIE EPQKLLKKVV AGGAWASNGG GDTTRTAKES GIRNHVMSER  180
KRREKLNEMF LVLKSLVPSI YKVNKASILA ETIAYLKELQ RRVHELESSR EPISRPSETR  240
RLTKRHDDGS ARKKVSAGSK RKGSELGGDM VRDEHPWALS KDGASNVTVT VSDKDVLVEV  300
QCRWEELLMT RVFDAIKNLH LDVLSVQASA PDGFMGLKIR AQFASSAAVV PWMISEALRK  360
AIGKR*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	178	183	ERKRRE
2	179	184	RKRREK

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcriptional activator. Control tissue-specific synthesis of anthocyanin pigments in various parts of the maize plant.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ726800	9e-87	KJ726800.1 Zea mays clone pUT3027 bHLH transcription factor (bHLH1) mRNA, partial cds.
GenBank	MZEREGG	9e-87	M26227.1 Zea mays Lc regulatory protein mRNA, complete cds.
GenBank	X60706	9e-87	X60706.1 Maize SN mRNA, involved in tissue-specific anthocyanin expression.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025823475.1	0.0	anthocyanin regulatory R-S protein-like isoform X2
Swissprot	P13526	1e-145	ARLC_MAIZE; Anthocyanin regulatory Lc protein
TrEMBL	A0A2T8IDH8	0.0	A0A2T8IDH8_9POAL; Uncharacterized protein
STRING	Si000845m	0.0	(Setaria italica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G63650.3	2e-34	bHLH family protein

Link Out ? help Back to Top
Phytozome	Pahal.G01894.7

Publications ? help Back to Top
Pattanaik S,Xie CH,Yuan L The interaction domains of the plant Myc-like bHLH transcription factors can regulate the transactivation strength. Planta, 2008. 227(3): p. 707-15 [PMID:18075757] Huang ZA, et al. The upregulation of NtAN2 expression at low temperature is required for anthocyanin accumulation in juvenile leaves of Lc-transgenic tobacco (Nicotiana tabacum L.). J Genet Genomics, 2012. 39(3): p. 149-56 [PMID:22464474] Ludwig SR,Habera LF,Dellaporta SL,Wessler SR Lc, a member of the maize R gene family responsible for tissue-specific anthocyanin production, encodes a protein similar to transcriptional activators and contains the myc-homology region. Proc. Natl. Acad. Sci. U.S.A., 1989. 86(18): p. 7092-6 [PMID:2674946] Li P, et al. Combined bulked segregant sequencing and traditional linkage analysis for identification of candidate gene for purple leaf sheath in maize. PLoS ONE, 2018. 13(1): p. e0190670 [PMID:29304111]