PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.G01894.6 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 492aa MW: 53546.6 Da PI: 6.7381 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 42.6 | 1e-13 | 287 | 334 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 r+h + Er+RR+++N+ f L++l+P+ K++Ka+iL +++ Y+k+Lq Pahal.G01894.6 287 RNHVMSERKRREKLNEMFLVLKSLVPSiY------KVNKASILAETIAYLKELQ 334 5799***********************77......******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 1.4E-10 | 66 | 112 | IPR025610 | Transcription factor MYC/MYB N-terminal |
PROSITE profile | PS50888 | 15.497 | 284 | 333 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 8.66E-16 | 287 | 338 | No hit | No description |
SuperFamily | SSF47459 | 1.57E-17 | 287 | 350 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.4E-11 | 287 | 334 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.0E-17 | 288 | 345 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.7E-15 | 290 | 339 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 492 aa Download sequence Send to blast |
MRGATGCRAG ASPATNMSGC ATRNSPTAKP SPARSWRRYV SAFSVSVYRL PFVFVINRSQ 60 SLLAHHELRR FEQGASIQTI VCIPLMSGVL ELGTTDPVVE DPDLVSRATA SFWEMQFPAC 120 SQEPSSSPSA NETGKAADII VFEDLDHNAM EEMIAGGQEL DESESLSNAT LEHITKEIDE 180 FYSLCEEMDV QPLEDCWIMD GSFEVPSPPQ PAAGASTHDA ATSSTPVRGS RATSFTAWTR 240 SASDSGEVAV LVIEEPQKLL KKVVAGGAWA SNGGGDTTRT AKESGIRNHV MSERKRREKL 300 NEMFLVLKSL VPSIYKVNKA SILAETIAYL KELQRRVHEL ESSREPISRP SETRRLTKRH 360 DDGSARKKVS AGSKRKGSEL GGDMVRDEHP WALSKDGASN VTVTVSDKDV LVEVQCRWEE 420 LLMTRVFDAI KNLHLDVLSV QASAPDGFMG LKIRAQVALR HGSCNAALFA SSAAVVPWMI 480 SEALRKAIGK R* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 292 | 297 | ERKRRE |
2 | 293 | 298 | RKRREK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcriptional activator. Control tissue-specific synthesis of anthocyanin pigments in various parts of the maize plant. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025823473.1 | 0.0 | anthocyanin regulatory R-S protein-like isoform X1 | ||||
Refseq | XP_025823474.1 | 0.0 | anthocyanin regulatory R-S protein-like isoform X1 | ||||
Swissprot | P13526 | 1e-163 | ARLC_MAIZE; Anthocyanin regulatory Lc protein | ||||
TrEMBL | A0A2S3I992 | 0.0 | A0A2S3I992_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J34298.1.p | 0.0 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G63650.3 | 4e-31 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Pahal.G01894.6 |
Publications ? help Back to Top | |||
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