PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.G01894.5

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bHLH

Protein Properties

Length: 480aa MW: 52353.2 Da PI: 6.5212

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.G01894.5	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	42.7	1e-13	287	334	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 r+h + Er+RR+++N+ f L++l+P+ K++Ka+iL +++ Y+k+Lq Pahal.G01894.5 287 RNHVMSERKRREKLNEMFLVLKSLVPSiY------KVNKASILAETIAYLKELQ 334 5799*********************77......****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF14215	1.4E-10	66	112	IPR025610	Transcription factor MYC/MYB N-terminal
PROSITE profile	PS50888	15.497	284	333	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	8.22E-16	287	338	No hit	No description
SuperFamily	SSF47459	1.44E-17	287	350	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.2E-11	287	334	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.8E-17	288	345	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.7E-15	290	339	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 480 aa Download sequence Send to blast
MRGATGCRAG ASPATNMSGC ATRNSPTAKP SPARSWRRYV SAFSVSVYRL PFVFVINRSQ 60 SLLAHHELRR FEQGASIQTI VCIPLMSGVL ELGTTDPVVE DPDLVSRATA SFWEMQFPAC 120 SQEPSSSPSA NETGKAADII VFEDLDHNAM EEMIAGGQEL DESESLSNAT LEHITKEIDE 180 FYSLCEEMDV QPLEDCWIMD GSFEVPSPPQ PAAGASTHDA ATSSTPVRGS RATSFTAWTR 240 SASDSGEVAV LVIEEPQKLL KKVVAGGAWA SNGGGDTTRT AKESGIRNHV MSERKRREKL 300 NEMFLVLKSL VPSIYKVNKA SILAETIAYL KELQRRVHEL ESSREPISRP SETRRLTKRH 360 DDGSARKKVS AGSKRKGSEL GGDMVRDEHP WALSKDGASN VTVTVSDKDV LVEVQCRWEE 420 LLMTRVFDAI KNLHLDVLSV QASAPDGFMG LKIRAQFASS AAVVPWMISE ALRKAIGKR*

Sequence ? help Back to Top

Protein Sequence Length: 480 aa Download sequence Send to blast

MRGATGCRAG ASPATNMSGC ATRNSPTAKP SPARSWRRYV SAFSVSVYRL PFVFVINRSQ  60
SLLAHHELRR FEQGASIQTI VCIPLMSGVL ELGTTDPVVE DPDLVSRATA SFWEMQFPAC  120
SQEPSSSPSA NETGKAADII VFEDLDHNAM EEMIAGGQEL DESESLSNAT LEHITKEIDE  180
FYSLCEEMDV QPLEDCWIMD GSFEVPSPPQ PAAGASTHDA ATSSTPVRGS RATSFTAWTR  240
SASDSGEVAV LVIEEPQKLL KKVVAGGAWA SNGGGDTTRT AKESGIRNHV MSERKRREKL  300
NEMFLVLKSL VPSIYKVNKA SILAETIAYL KELQRRVHEL ESSREPISRP SETRRLTKRH  360
DDGSARKKVS AGSKRKGSEL GGDMVRDEHP WALSKDGASN VTVTVSDKDV LVEVQCRWEE  420
LLMTRVFDAI KNLHLDVLSV QASAPDGFMG LKIRAQFASS AAVVPWMISE ALRKAIGKR*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	292	297	ERKRRE
2	293	298	RKRREK

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcriptional activator. Control tissue-specific synthesis of anthocyanin pigments in various parts of the maize plant.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ726800	1e-86	KJ726800.1 Zea mays clone pUT3027 bHLH transcription factor (bHLH1) mRNA, partial cds.
GenBank	MZEREGG	1e-86	M26227.1 Zea mays Lc regulatory protein mRNA, complete cds.
GenBank	X60706	1e-86	X60706.1 Maize SN mRNA, involved in tissue-specific anthocyanin expression.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025823475.1	0.0	anthocyanin regulatory R-S protein-like isoform X2
Swissprot	P13526	1e-166	ARLC_MAIZE; Anthocyanin regulatory Lc protein
TrEMBL	A0A2S3I990	0.0	A0A2S3I990_9POAL; Uncharacterized protein
STRING	Pavir.J34298.1.p	0.0	(Panicum virgatum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G63650.3	8e-34	bHLH family protein

Link Out ? help Back to Top
Phytozome	Pahal.G01894.5

Publications ? help Back to Top
Pattanaik S,Xie CH,Yuan L The interaction domains of the plant Myc-like bHLH transcription factors can regulate the transactivation strength. Planta, 2008. 227(3): p. 707-15 [PMID:18075757] Huang ZA, et al. The upregulation of NtAN2 expression at low temperature is required for anthocyanin accumulation in juvenile leaves of Lc-transgenic tobacco (Nicotiana tabacum L.). J Genet Genomics, 2012. 39(3): p. 149-56 [PMID:22464474] Ludwig SR,Habera LF,Dellaporta SL,Wessler SR Lc, a member of the maize R gene family responsible for tissue-specific anthocyanin production, encodes a protein similar to transcriptional activators and contains the myc-homology region. Proc. Natl. Acad. Sci. U.S.A., 1989. 86(18): p. 7092-6 [PMID:2674946] Li P, et al. Combined bulked segregant sequencing and traditional linkage analysis for identification of candidate gene for purple leaf sheath in maize. PLoS ONE, 2018. 13(1): p. e0190670 [PMID:29304111]