PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.G01894.4
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 581aa    MW: 63565.9 Da    PI: 5.4523
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.G01894.4genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.31.3e-13376423355
                     HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                     r+h + Er+RR+++N+ f  L++l+P+        K++Ka+iL +++ Y+k+Lq
  Pahal.G01894.4 376 RNHVMSERKRREKLNEMFLVLKSLVPSiY------KVNKASILAETIAYLKELQ 423
                     5799***********************77......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142158.6E-5318201IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088815.497373422IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.86E-16376427No hitNo description
SuperFamilySSF474591.96E-17376439IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.2E-11377423IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.0E-17377434IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.7E-15379428IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 581 aa     Download sequence    Send to blast
MALSASLVRQ DVPPGRQLRN QLAAAVRSIN WSYAFFWSIS NAQPGILTWT DGFYNGEVKT  60
RKIANSAELT AEQLVMQRSE QLRELYEALL SGECDRRAAR PVASLSPEDL GDTEWYYVVC  120
MTYAFRPGQG LPGRSFASNE HVWLCNAQLA DSKAFPRALL AKGASIQTIV CIPLMSGVLE  180
LGTTDPVVED PDLVSRATAS FWEMQFPACS QEPSSSPSAN ETGKAADIIV FEDLDHNAME  240
EMIAGGQELD ESESLSNATL EHITKEIDEF YSLCEEMDVQ PLEDCWIMDG SFEVPSPPQP  300
AAGASTHDAA TSSTPVRGSR ATSFTAWTRS ASDSGEVAVL VIEEPQKLLK KVVAGGAWAS  360
NGGGDTTRTA KESGIRNHVM SERKRREKLN EMFLVLKSLV PSIYKVNKAS ILAETIAYLK  420
ELQRRVHELE SSREPISRPS ETRRLTKRHD DGSARKKVSA GSKRKGSELG GDMVRDEHPW  480
ALSKDGASNV TVTVSDKDVL VEVQCRWEEL LMTRVFDAIK NLHLDVLSVQ ASAPDGFMGL  540
KIRAQVALRH GSCNAALFAS SAAVVPWMIS EALRKAIGKR *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A2e-21182019192Transcription factor MYC3
4rqw_B2e-21182019192Transcription factor MYC3
4rs9_A2e-21182019192Transcription factor MYC3
4yz6_A2e-21182019192Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1381386ERKRRE
2382387RKRREK
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator. Control tissue-specific synthesis of anthocyanin pigments in various parts of the maize plant.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025823473.10.0anthocyanin regulatory R-S protein-like isoform X1
RefseqXP_025823474.10.0anthocyanin regulatory R-S protein-like isoform X1
SwissprotP135260.0ARLC_MAIZE; Anthocyanin regulatory Lc protein
TrEMBLA0A2S3I9E40.0A0A2S3I9E4_9POAL; Uncharacterized protein
STRINGSi000845m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09820.13e-85bHLH family protein
Publications ? help Back to Top
  1. Pattanaik S,Xie CH,Yuan L
    The interaction domains of the plant Myc-like bHLH transcription factors can regulate the transactivation strength.
    Planta, 2008. 227(3): p. 707-15
    [PMID:18075757]
  2. Huang ZA, et al.
    The upregulation of NtAN2 expression at low temperature is required for anthocyanin accumulation in juvenile leaves of Lc-transgenic tobacco (Nicotiana tabacum L.).
    J Genet Genomics, 2012. 39(3): p. 149-56
    [PMID:22464474]
  3. Ludwig SR,Habera LF,Dellaporta SL,Wessler SR
    Lc, a member of the maize R gene family responsible for tissue-specific anthocyanin production, encodes a protein similar to transcriptional activators and contains the myc-homology region.
    Proc. Natl. Acad. Sci. U.S.A., 1989. 86(18): p. 7092-6
    [PMID:2674946]
  4. Li P, et al.
    Combined bulked segregant sequencing and traditional linkage analysis for identification of candidate gene for purple leaf sheath in maize.
    PLoS ONE, 2018. 13(1): p. e0190670
    [PMID:29304111]