PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.G01829.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 340aa    MW: 36533.4 Da    PI: 8.8751
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.G01829.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.74.2e-112974146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                     +g+W +eEd  l++ v+ +G+++W++I ++  + Rt+k+c++rw +
   Pahal.G01829.1 29 KGPWMAEEDAVLLEHVRAHGPRDWSSIRSKGLLPRTGKSCRLRWVN 74
                     79*************************8876677**********87 PP
2Myb_DNA-binding42.51.5e-1385125345
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      ++++eE+   +++ +q+G++ W++Ia +++ gRt++++k++w 
   Pahal.G01829.1  85 KFSAEEERVVLELQAQFGNK-WARIATYLP-GRTDNDVKNFWS 125
                      79******************.*********.***********5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.9782476IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.1E-182677IPR009057Homeodomain-like
SuperFamilySSF466892.85E-2627124IPR009057Homeodomain-like
SMARTSM007171.1E-92878IPR001005SANT/Myb domain
CDDcd001672.02E-103176No hitNo description
PfamPF139213.9E-103282No hitNo description
PROSITE profilePS5129420.25277132IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.0E-1878130IPR009057Homeodomain-like
SMARTSM007175.2E-1282130IPR001005SANT/Myb domain
PfamPF002498.3E-1285125IPR001005SANT/Myb domain
CDDcd001671.43E-1085124No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048235Biological Processpollen sperm cell differentiation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MARAPGGGRR RGGGGRRRDA AGGAEAVRKG PWMAEEDAVL LEHVRAHGPR DWSSIRSKGL  60
LPRTGKSCRL RWVNKLRPNL KTGCKFSAEE ERVVLELQAQ FGNKWARIAT YLPGRTDNDV  120
KNFWSTRQKR LARLLRAPLP ARSSKNSSGK APAASSLESR PATVGPCLDR VPFGTNSSVH  180
PCSAATPFMN TQNAARVPYD QSASGLLSFN GALPPFAPAT DSHACSSSNA APFLQKSPFD  240
EPPYPLLDYP GMPECWSMAP GGFVNAGAMD DLAYQELLPM MAQSAPMMFP FFGMECAQGG  300
VKPEPPDAPD FFDDLPADMF DSLDQVPPPL SPPATSSGF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-262913027126MYB TRANSFORMING PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1614GGRRRGGGG
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL6630001e-54AL663000.4 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0034G17, complete sequence.
GenBankAL7316131e-54AL731613.5 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0065H10, complete sequence.
GenBankAP0149601e-54AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBankCP0126121e-54CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
GenBankCR8552181e-54CR855218.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0106P14, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025824013.10.0probable transcription factor MYB58
SwissprotQ0JB891e-116MYB58_ORYSJ; Probable transcription factor MYB58
TrEMBLA0A2S3I9S80.0A0A2S3I9S8_9POAL; Uncharacterized protein
STRINGPavir.Gb01130.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP57003357
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60460.16e-61MYB family protein
Publications ? help Back to Top
  1. Yilmaz A, et al.
    GRASSIUS: a platform for comparative regulatory genomics across the grasses.
    Plant Physiol., 2009. 149(1): p. 171-80
    [PMID:18987217]