PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.G01811.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 335aa    MW: 35812.3 Da    PI: 5.8336
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.G01811.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.25.4e-20143194256
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                     +y+GVr+++ +g+++AeIrdp+ +g   r++lg+++t+ eAa+a+++a+ +++g+
  Pahal.G01811.1 143 KYRGVRQRP-WGKYAAEIRDPKRRG--SRVWLGTYDTPVEAARAYDRAAFQMRGA 194
                     8********.**********96554..*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.3E-32142202IPR001471AP2/ERF domain
CDDcd000187.30E-29143202No hitNo description
PfamPF008471.9E-14143193IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-23143202IPR016177DNA-binding domain
SMARTSM003808.1E-37143207IPR001471AP2/ERF domain
PROSITE profilePS5103223.96143201IPR001471AP2/ERF domain
PRINTSPR003672.1E-13144155IPR001471AP2/ERF domain
PRINTSPR003672.1E-13183203IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MEFIGDADRF GLDFIRDLLL GGDGRVAPVA SPAVSDDVTF PVLQPQPELQ PMPSFLPQQY  60
QQQHQGYIDL TREYMVAPPA APAVGEAAFR AQEPALVMIK FGSEPPSPVS VRPPLSISVP  120
PSSYAWAAAA PAAAPAAVED YRKYRGVRQR PWGKYAAEIR DPKRRGSRVW LGTYDTPVEA  180
ARAYDRAAFQ MRGAKAILNF PNEVGTRGAD LWGPPPPPAP ATQAAAAANK RKRNHREDPD  240
DVEVVAVVNK AVKREEAPPP PSTQVSSTSP SSMSTRETTA SSTVTSTATE TGAGAETPSS  300
GSWEQYWEAL LGGLPPLSPL SPHPTLGFPQ LIVN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-261432031474Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7275251e-100KJ727525.1 Zea mays clone pUT5385 AP2-EREBP transcription factor (EREB61) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025826125.10.0ethylene-responsive transcription factor ERF105-like
TrEMBLA0A2T8IDB70.0A0A2T8IDB7_9POAL; Uncharacterized protein
STRINGPavir.Gb01173.1.p1e-120(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47230.12e-31ethylene responsive element binding factor 5