PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.G01790.4

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

GATA

Protein Properties

Length: 337aa MW: 36882.1 Da PI: 8.1704

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.G01790.4	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	51.8	1.1e-16	7	41	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C++Cg+t+TplWR+gp ++ LCnaCG ++r kg+ Pahal.G01790.4 7 CHHCGVTSTPLWRNGPPDKPVLCNACGSRWRTKGS 41 **************55555*********997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00401	3.2E-11	1	53	IPR000679	Zinc finger, GATA-type
SuperFamily	SSF57716	1.09E-11	5	45	No hit	No description
CDD	cd00202	5.74E-15	6	40	No hit	No description
Gene3D	G3DSA:3.30.50.10	5.6E-13	7	41	IPR013088	Zinc finger, NHR/GATA-type
Pfam	PF00320	1.7E-14	7	41	IPR000679	Zinc finger, GATA-type
PROSITE profile	PS50114	11.266	7	40	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 337 aa Download sequence Send to blast
MGKQGPCHHC GVTSTPLWRN GPPDKPVLCN ACGSRWRTKG SLANYTPMHR KDDIDDDEPR 60 ISKLKPPTSK SKSQKKKTNH IIMENGPFSC QNFRKMGDAD PSYRSSSGSA VSYSENCGPY 120 GASDASEMTG SAQSHAWESL VPSRKRSCVT RQKPSSVEKL AKDLNSIMHE EQLYYLSGSS 180 EEDLLYHSET HVGSFEMGSG CVLLRHPNLK SLEEESEASS IPADNKSYIT SESYSGSASF 240 VAHSGNRAAI NLNAATARPK RSLLHIEDNA RRDKLHYGNQ HIPESIDSPL VSVGLEEKEI 300 KATGRVENIC GSKGFTKSTM NLLKRSHDTH IQSDIG*

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT042487	0.0	BT042487.1 Zea mays full-length cDNA clone ZM_BFb0296I21 mRNA, complete cds.
GenBank	EU962117	0.0	EU962117.1 Zea mays clone 240325 GATA transcription factor 29 mRNA, complete cds.
GenBank	KJ726846	0.0	KJ726846.1 Zea mays clone pUT3386 C2C2-GATA transcription factor (GATA5) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025825377.1	0.0	uncharacterized protein LOC112900793
TrEMBL	A0A2S3I926	0.0	A0A2S3I926_9POAL; Uncharacterized protein
STRING	Pavir.Gb01197.1.p	0.0	(Panicum virgatum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17570.3	1e-59	GATA transcription factor 26

Link Out ? help Back to Top
Phytozome	Pahal.G01790.4