PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.G01790.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | GATA | ||||||||
Protein Properties | Length: 452aa MW: 49193 Da PI: 6.8196 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 51.3 | 1.6e-16 | 7 | 41 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C++Cg+t+TplWR+gp ++ LCnaCG ++r kg+ Pahal.G01790.3 7 CHHCGVTSTPLWRNGPPDKPVLCNACGSRWRTKGS 41 ****************55555***********997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 3.2E-11 | 1 | 53 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.71E-11 | 5 | 45 | No hit | No description |
CDD | cd00202 | 3.82E-15 | 6 | 40 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 6.8E-13 | 7 | 41 | IPR013088 | Zinc finger, NHR/GATA-type |
Pfam | PF00320 | 2.5E-14 | 7 | 41 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 11.266 | 7 | 40 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 452 aa Download sequence Send to blast |
MGKQGPCHHC GVTSTPLWRN GPPDKPVLCN ACGSRWRTKG SLANYTPMHR KDDIDDDEPR 60 ISKLKPPTSK SKSQKKKTNH IIMENGPFSC QNFRKMGDAD PSYRSSSGSA VSYSENCGPY 120 GASDASEMTG SAQSHAWESL VPSRKRSCVT RQKPSSVEKL AKDLNSIMHE EQLYYLSGSS 180 EEDLLYHSET HVGSFEMGSG CVLLRHPNLK SLEEESEASS IPADNKSYIT SESYSGSASF 240 VAHSGNRAAI NLNAATARPK RSLLHIEDNA RRDKLHYGNQ HIPESIDSPL VSVGLEEKEI 300 KATGRVENIC GSKGFTKSTM NLLKRSHDTH IQSDIELEGT MMSPKRVLKS GDLTPEFKSS 360 SLLKSGYATK DSTCTGGALN LFMLPPEKLS LLVPPQYADG DFDQDLLLEI PLNAWHAEAE 420 LLCQPSQLSS ITQSNTSVDG DAGGEGCLKQ P* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025825377.1 | 0.0 | uncharacterized protein LOC112900793 | ||||
TrEMBL | A0A2S3I8X4 | 0.0 | A0A2S3I8X4_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Gb01197.1.p | 0.0 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17570.3 | 2e-58 | GATA transcription factor 26 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.G01790.3 |