PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.G01769.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 254aa MW: 28534.9 Da PI: 6.234 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 61.9 | 9.9e-20 | 57 | 110 | 4 | 56 |
-SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFek.nrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ft+eq++ Le++F+ + ++ +e++eLA++lgL+ rqV +WFqN+Ra+++ Pahal.G01769.1 57 KRRFTEEQIRSLESMFHAhHAKLEPREKAELARELGLQPRQVAIWFQNKRARWR 110 458**************9899********************************9 PP | |||||||
2 | HD-ZIP_I/II | 122.9 | 1.5e-39 | 55 | 148 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeee.kLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 e+krr+++eq+++LE++F++++ kLep++K+elareLglqprqva+WFqn+RAR+++kqlE+dy+aL++++dal+++ e L++e+++L+++l+e Pahal.G01769.1 55 ERKRRFTEEQIRSLESMFHAHHaKLEPREKAELARELGLQPRQVAIWFQNKRARWRSKQLEQDYAALRDKFDALHARVEFLKQEKHALTAQLQE 148 69******************999********************************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.38E-18 | 44 | 114 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.621 | 51 | 112 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.6E-19 | 54 | 116 | IPR001356 | Homeobox domain |
CDD | cd00086 | 5.18E-17 | 56 | 113 | No hit | No description |
Pfam | PF00046 | 3.7E-17 | 57 | 110 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 7.4E-20 | 57 | 119 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 6.2E-7 | 83 | 92 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 87 | 110 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 6.2E-7 | 92 | 108 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 5.5E-13 | 112 | 153 | IPR003106 | Leucine zipper, homeobox-associated |
Gene3D | G3DSA:1.20.5.170 | 9.2E-4 | 122 | 154 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MDRPDRHQFF MPVQQPQLPP PPHHHHQQLC APMMDEQASF LAGRGGGGGA AGRGERKRRF 60 TEEQIRSLES MFHAHHAKLE PREKAELARE LGLQPRQVAI WFQNKRARWR SKQLEQDYAA 120 LRDKFDALHA RVEFLKQEKH ALTAQLQELS ERLRKREDHR AASGGVAATA SSSCNGGGEE 180 AEDDKRNVVL RCVDMEPPES CVLGGACATP ADVSVESECD DHRLGYDDGF PESFCATPEL 240 WEPWPLVEWN AVA* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}. | |||||
UniProt | INDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ728250 | 0.0 | KJ728250.1 Zea mays clone pUT6527 HB transcription factor (HB66) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025826405.1 | 0.0 | homeobox-leucine zipper protein HOX22-like | ||||
Swissprot | Q01IK0 | 2e-91 | HOX22_ORYSI; Homeobox-leucine zipper protein HOX22 | ||||
Swissprot | Q7XUJ5 | 2e-91 | HOX22_ORYSJ; Homeobox-leucine zipper protein HOX22 | ||||
TrEMBL | A0A2S3I915 | 0.0 | A0A2S3I915_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ga00670.1.p | 1e-128 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4027 | 31 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46680.1 | 8e-34 | homeobox 7 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.G01769.1 |