PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.G01761.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | DBB | ||||||||
Protein Properties | Length: 271aa MW: 29273.5 Da PI: 4.8715 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 19.8 | 1.6e-06 | 4 | 43 | 5 | 38 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 C+ + + ++ fC ++ lC+ C H+ H+ Pahal.G01761.1 4 QCDVCAAEAASVFCCADEAALCDACDRRVHRAnklagkHR 43 7*****************************7677777776 PP | |||||||
2 | zf-B_box | 22.7 | 2e-07 | 58 | 91 | 2 | 35 |
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHk 35 +++ C+ ++e + lfC++++ lC++C + H Pahal.G01761.1 58 KPPLCDICQERRGFLFCKEDRAILCRECDVPVHT 91 6789*******9*****************99884 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 3.6E-10 | 1 | 47 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 9.84 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.00E-6 | 3 | 47 | No hit | No description |
Pfam | PF00643 | 1.4E-5 | 4 | 44 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 3.8E-14 | 57 | 104 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 9.783 | 57 | 104 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 3.8E-6 | 58 | 99 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.19E-8 | 60 | 104 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009641 | Biological Process | shade avoidance | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 271 aa Download sequence Send to blast |
MKVQCDVCAA EAASVFCCAD EAALCDACDR RVHRANKLAG KHRRFSLLHP TSSTAQTKPP 60 LCDICQERRG FLFCKEDRAI LCRECDVPVH TASEMTRRHS RFLLTGVRLS SAPVDSPAAS 120 EEEDQEEENS GSPCNADSCS GAGATATASA SDGSSISEYL TKTLPGWHVE DFLVDDASAG 180 ALGACSDDAL YDYQQGEQGQ IGGLLQDAYT PWTGREQLLA DVVVTADERA SRERWVPQMH 240 AEFAGSKRPP ERRLPARTGE TEKLAVFSAR * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that acts as positive regulator of seedling photomorphogenesis (PubMed:17965270). Acts downstream of COP1 and play an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). {ECO:0000269|PubMed:17965270, ECO:0000269|PubMed:21070414}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP093591 | 0.0 | FP093591.1 Phyllostachys edulis cDNA clone: bphylf056b15, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025822829.1 | 0.0 | B-box zinc finger protein 20-like isoform X2 | ||||
Swissprot | Q9LQZ7 | 2e-55 | BBX21_ARATH; B-box zinc finger protein 21 | ||||
TrEMBL | A0A2S3I8X1 | 0.0 | A0A2S3I8X1_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Gb01186.1.p | 1e-159 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2392 | 36 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39070.1 | 4e-41 | DBB family protein |
Link Out ? help Back to Top | |
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Phytozome | Pahal.G01761.1 |