PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.G01759.3
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GATA
Protein Properties Length: 390aa    MW: 41036.2 Da    PI: 7.4541
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.G01759.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.22.5e-19309343135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     Cs+Cg+ kTp+WR gp+g ktLCnaCG++y++ +l
  Pahal.G01759.3 309 CSHCGVQKTPQWRAGPEGAKTLCNACGVRYKSGRL 343
                     *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577162.19E-14302364No hitNo description
SMARTSM004011.8E-18303357IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.018303339IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.7E-15307341IPR013088Zinc finger, NHR/GATA-type
CDDcd002028.25E-15308365No hitNo description
PROSITE patternPS003440309334IPR000679Zinc finger, GATA-type
PfamPF003202.7E-17309343IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MCACFSGPAV KDDGRMDALK SDNSFPPEET AEDAAAAAAS ALVEKDGFSV EDLLDLEEFC  60
EPDKDGPDDV EAPPPPAATA AEVKSNEDSQ PLSVVTYELP PPPPEMVDLP AHDVEELEWV  120
SRIMDDSLSE LPPQPQPPAA LVASMSARPP LAQQRRAPQV HDGAYRALPA APGPLRTPTI  180
CALSTEALVP VKAKRSKRTR GPGWSLSGAS FLSDSASSSS TTTTSSCSSS GSFSPFLFLD  240
SAPFSGLELG EGYYNHFLPA PPSKKSKHGG GKGSKHKPKK RGRKPKHLPP NPSAAGAAAP  300
QPAPGDRRCS HCGVQKTPQW RAGPEGAKTL CNACGVRYKS GRLLPEYRPA CSPTFVSSIH  360
SNSHRKVLEM RRKKEGGMVA TAAPAVASF*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001151060.10.0uncharacterized protein LOC100284693
RefseqXP_004976389.10.0GATA transcription factor 6
TrEMBLA0A2S3I8X60.0A0A2S3I8X6_9POAL; Uncharacterized protein
STRINGPavir.Ga00679.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.29e-40GATA transcription factor 5