PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.G01730.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 514aa    MW: 52870.9 Da    PI: 9.7374
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.G01730.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.17.5e-06238260223
                     EETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                      Cp Cg++F+  ++L++H+   H
  Pahal.G01730.1 238 ACPQCGEVFTKADSLEHHQAIrH 260
                     6******************9877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000280237260IPR007087Zinc finger, C2H2
PROSITE profilePS501579.494237265IPR007087Zinc finger, C2H2
SuperFamilySSF563991.34E-14262344No hitNo description
Gene3DG3DSA:3.90.228.106.4E-8264343IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene3DG3DSA:3.90.228.106.4E-8392509IPR012317Poly(ADP-ribose) polymerase, catalytic domain
SuperFamilySSF563991.34E-14392509No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 514 aa     Download sequence    Send to blast
MALATLLLPS STASKADAGD HSDSRRHDHH HGSKRKKKPP PSPQPSLSSA PRTPPGARSQ  60
RGMAVAASSK KSPKVAAAAA AKNRPQYQQH RAQSTKKAAA TSSSSSSSSS WEQVKSLLSC  120
RSATAAARVH DPAAPSALAR LRGSGAGACG ASLCAMRDVV DAASSAASSA AASASASADR  180
DTAPLNRRRA HRAGSSSSSA AGAGHHSSLR GLSGCYECRA INVEPMSRRY PRPRELCACP  240
QCGEVFTKAD SLEHHQAIRH AVSELGPEDS GRNIVEIIFK SSWQKRDRPI CHIDRILKVH  300
NAPRTVARFE AYRDAVRSRC RATAARAAAD GNELLRFHSA PLACALGLSG ATSLCAGAAA  360
DSSSRSNTAD TAASSSSSSA AGPSTAATCC GVCTAIRHGF APWVGAHPLG VRTTASSGRA  420
HDCGSSAMSS AQAANADDNG GCRAMLVCRV IAGRVRRDGD ACTSAAGEEG PFDSVAGEDA  480
ASSSVYGNLE ELFVANPRAI LPCFVVIYRV LES*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0856070.0BT085607.2 Zea mays full-length cDNA clone ZM_BFc0038L11 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822927.10.0uncharacterized protein LOC112898841
TrEMBLA0A2S3I5220.0A0A2S3I522_9POAL; Uncharacterized protein
STRINGGRMZM2G158141_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124312731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.11e-78C2H2-like zinc finger protein