PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.G01712.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bHLH

Protein Properties

Length: 276aa MW: 30047.9 Da PI: 4.565

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.G01712.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	42.5	1.2e-13	79	124	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + ++Er RR+++N+++ Lr+++P+ +K++Ka+i + A+eYI++Lq Pahal.G01712.1 79 NIIMERDRRRKLNEKLYALRSVVPNI-----TKMDKASIIKDAIEYIQQLQ 124 5689*******************7.....7****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	16.329	74	123	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.19E-17	78	140	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.12E-14	78	128	No hit	No description
Pfam	PF00010	2.2E-11	79	124	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.3E-16	80	137	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	9.7E-16	80	129	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 276 aa Download sequence Send to blast
MEMGDSFEYY WEMQRLFESD ELSIYLNGAQ DNALSCYDSS SPDGSMSNSS WAPAATADDD 60 KGPGAAAAEG GVGEGANKNI IMERDRRRKL NEKLYALRSV VPNITKMDKA SIIKDAIEYI 120 QQLQAEERRV LQELEAAAGA QQMDRAAYEY EYDEGVLLQA ERAKKPKRAP SIAPASAPVE 180 VLELRVSEVG ERVLVVSVTC GKGREAVARV CRAVEELRLR VITASITSVA GCLMHTIFVE 240 LDQGDDRARM KRTIEAALTQ LDAAAGGSPP SVMSY*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025823722.1	0.0	transcription factor bHLH35-like
TrEMBL	A0A2S3I5P2	0.0	A0A2S3I5P2_9POAL; Uncharacterized protein
STRING	Pavir.Ga02255.1.p	1e-151	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1044	38	133

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57150.1	6e-45	bHLH family protein

Link Out ? help Back to Top
Phytozome	Pahal.G01712.1