PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.G01710.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 317aa    MW: 34993.7 Da    PI: 8.6719
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.G01710.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.36.6e-14120165555
                     HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     + ++Er RR+++N+++  Lr+++P+      +K++Ka+i + A+eYI++Lq
  Pahal.G01710.1 120 NIIMERDRRRKLNEKLYALRSVVPNI-----TKMDKASIIKDAIEYIQHLQ 165
                     5689*********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.336115164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.84E-17118178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.17E-13119169No hitNo description
PfamPF000101.4E-11120165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-16121177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.3E-16121170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MTASHAGAYK LAGERRASCS VPRPSQRQKN RAHRRRRRLT RLELGSIMDA EMGDSYWEET  60
QRYLEYEELS IYLEAQEDAM SCYDSSSPDG SNSHSSSAPA GDGRGPGGGA GRAAEGANKN  120
IIMERDRRRK LNEKLYALRS VVPNITKMDK ASIIKDAIEY IQHLQAEERR VLQELEAAGG  180
AQDERYEYDE GVLLQAERAK KLKRARSVPS IARGAAPPPP PPVEVLELRV SEVGERVLVV  240
SLTCSKRRDA MARVCRAIEE LRLRVITASI TSVAGCLMHT VFVEVDQMDG IQMKKMVETA  300
LAQLNATGSP PSSMSY*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2422102e-78AK242210.1 Oryza sativa Japonica Group cDNA, clone: J075170K16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025823098.10.0transcription factor bHLH35-like
TrEMBLA0A2S3I5L00.0A0A2S3I5L0_9POAL; Uncharacterized protein
STRINGSi010812m1e-139(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP104438133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.12e-39bHLH family protein