PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.G01706.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 251aa MW: 26882.4 Da PI: 5.0138 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 42.5 | 1.1e-13 | 89 | 133 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +Er RR+r+N+++ Lr+++P+ +K++Ka+i++ A+ YI +Lq Pahal.G01706.2 89 MVMERDRRRRLNEKLYALRSVVPNI-----TKMDKASIVRDAIAYIEQLQ 133 569*********************7.....7******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.669 | 83 | 132 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.07E-16 | 85 | 147 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.22E-16 | 86 | 137 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 9.4E-16 | 89 | 148 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.4E-15 | 89 | 138 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.5E-11 | 89 | 133 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MEAADLLSLG FDFYCQSPPR FFDDQPPYDP DYLAVADSIM YAATEAESVT GLYPSYREAS 60 SSPDGANSCS AQVAPPASPG PAGAATKNMV MERDRRRRLN EKLYALRSVV PNITKMDKAS 120 IVRDAIAYIE QLQEEERRVL AEISALESSS GVAAAAEFKA EDADSYPWPR KRTRTAAGGS 180 THASPPLQIL EVQVTVAGEK VAVVSVRCSR GRDAVAKVCR ALEPLRLRVV TASIAAAGDA 240 VVHTMFVEPA * |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU961023 | 1e-60 | EU961023.1 Zea mays clone 230521 DNA binding like mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025823077.1 | 1e-180 | transcription factor bHLH35-like isoform X2 | ||||
TrEMBL | A0A2S3I5N2 | 1e-180 | A0A2S3I5N2_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Gb02374.1.p | 1e-152 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57150.3 | 2e-46 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Pahal.G01706.2 |