PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.G01706.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 286aa    MW: 30990 Da    PI: 4.971
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.G01706.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.21.4e-1389133655
                     HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +Er RR+r+N+++  Lr+++P+      +K++Ka+i++ A+ YI +Lq
  Pahal.G01706.1  89 MVMERDRRRRLNEKLYALRSVVPNI-----TKMDKASIVRDAIAYIEQLQ 133
                     569*********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.66983132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-1685147IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.67E-1586137No hitNo description
PfamPF000103.1E-1189133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.4E-1589138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-1589148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2601.0E-4214272No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MEAADLLSLG FDFYCQSPPR FFDDQPPYDP DYLAVADSIM YAATEAESVT GLYPSYREAS  60
SSPDGANSCS AQVAPPASPG PAGAATKNMV MERDRRRRLN EKLYALRSVV PNITKMDKAS  120
IVRDAIAYIE QLQEEERRVL AEISALESSS GVAAAAEFKA EDADSYPWPR KRTRTAAGGS  180
THASPPLQIL EVQVTVAGEK VAVVSVRCSR GRDAVAKVCR ALEPLRLRVV TASIAAAGDA  240
VVHTMFVEIE DKMSGAQLKE RIEAALAQLD VTNRCPLKTT RYWED*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9610231e-60EU961023.1 Zea mays clone 230521 DNA binding like mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025823077.10.0transcription factor bHLH35-like isoform X2
TrEMBLA0A2S3I5H00.0A0A2S3I5H0_9POAL; Uncharacterized protein
TrEMBLA0A2T7CT190.0A0A2T7CT19_9POAL; Uncharacterized protein
STRINGPavir.Gb02374.1.p1e-177(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP104438133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.31e-46bHLH family protein