PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.G01704.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 339aa MW: 35904.9 Da PI: 7.731 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.1 | 1.3e-12 | 136 | 179 | 7 | 55 |
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 Er RR+r+N+++ Lr+++P+ +K++Ka+i++ A+ Y+ +Lq Pahal.G01704.2 136 VTERGRRRRLNEKLYALRSVVPNI-----TKMDKASIVRDAIAYVEHLQ 179 57*********************7.....7******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.894 | 129 | 178 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.1E-15 | 131 | 193 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.5E-15 | 135 | 184 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.0E-14 | 136 | 193 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.6E-10 | 137 | 179 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 8.59E-14 | 138 | 183 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 339 aa Download sequence Send to blast |
MISASARNIY QVATRVAPLG RLEQENTLQQ QGQGAVPNLV RGAPMEADNS MVAMGFGLYW 60 HSPPRFLLEP LDLADAFADS MFAYAPASEA ESLSGLCASY APAESSSSPG GANNSCSAQA 120 AMPPPPPAAV VTRNVVTERG RRRRLNEKLY ALRSVVPNIT KMDKASIVRD AIAYVEHLQE 180 QERRVLADIA ALPSAAATVK TEDAATGGAT DDVDSFFPQT KRMRRAPSIA FADDGAATRS 240 ITTSSPPVRI LEVQVSESGE TMAVVSVRCS WGRGAVSMVC RALEPLRLGV VTATIAAAGD 300 TVVHTMFVEW TICKCSRCLV ATGVRYQSAN LGLRLASS* |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU961023 | 5e-45 | EU961023.1 Zea mays clone 230521 DNA binding like mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004975231.1 | 1e-115 | transcription factor bHLH35 isoform X2 | ||||
TrEMBL | A0A2S3I6D6 | 0.0 | A0A2S3I6D6_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ga02257.1.p | 1e-134 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57150.2 | 2e-23 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Pahal.G01704.2 |