PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.G01704.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 346aa    MW: 36556.6 Da    PI: 5.2361
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.G01704.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.11.4e-12136179755
                     HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       Er RR+r+N+++  Lr+++P+      +K++Ka+i++ A+ Y+ +Lq
  Pahal.G01704.1 136 VTERGRRRRLNEKLYALRSVVPNI-----TKMDKASIVRDAIAYVEHLQ 179
                     57*********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.894129178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.14E-15131193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.5E-15135184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-14136193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.7E-10137179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.26E-14138183No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MISASARNIY QVATRVAPLG RLEQENTLQQ QGQGAVPNLV RGAPMEADNS MVAMGFGLYW  60
HSPPRFLLEP LDLADAFADS MFAYAPASEA ESLSGLCASY APAESSSSPG GANNSCSAQA  120
AMPPPPPAAV VTRNVVTERG RRRRLNEKLY ALRSVVPNIT KMDKASIVRD AIAYVEHLQE  180
QERRVLADIA ALPSAAATVK TEDAATGGAT DDVDSFFPQT KRMRRAPSIA FADDGAATRS  240
ITTSSPPVRI LEVQVSESGE TMAVVSVRCS WGRGAVSMVC RALEPLRLGV VTATIAAAGD  300
TVVHTMFVET GEMGGALLLK EAILAALAQL DVTRSSLKSM SCWED*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9610235e-45EU961023.1 Zea mays clone 230521 DNA binding like mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004975231.11e-137transcription factor bHLH35 isoform X2
TrEMBLA0A2S3I6D60.0A0A2S3I6D6_9POAL; Uncharacterized protein
STRINGSi010685m1e-136(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP104438133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.12e-23bHLH family protein