PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.G01583.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 177aa    MW: 18915.3 Da    PI: 8.2938
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.G01583.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.51.2e-054466123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    y+C++C + F++   L  H+++H
  Pahal.G01583.1 44 YTCGYCRREFRSAQALGGHMNVH 66
                    9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512575129No hitNo description
SuperFamilySSF576672.12E-64271No hitNo description
PROSITE profilePS5015711.0744471IPR007087Zinc finger, C2H2
PfamPF139129.9E-64467IPR007087Zinc finger, C2H2
PROSITE patternPS0002804666IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MESSRDHGRV LKQLPSWTPA GHNFSLAGCF PWPPPQRSLS SSSYTCGYCR REFRSAQALG  60
GHMNVHRRDR ARLRQCCPAY PSPLPSSNPQ AAPHQHRAPL PNLNYSPPHC AAAPAATAEP  120
VIYSFFSTTT STTTVAAAAA ALQVSLELGI GVYGRGGGAV EEEGLDLELR LGCAWE*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may regulate cell division and growth. {ECO:0000269|Ref.4}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9591932e-39EU959193.1 Zea mays clone 211832 hypothetical protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025826453.11e-127transcriptional regulator SUPERMAN-like
SwissprotQ9SLB82e-18ZFP11_ARATH; Zinc finger protein 11
TrEMBLA0A2S3I5C91e-125A0A2S3I5C9_9POAL; Uncharacterized protein
STRINGPavir.J31403.1.p1e-86(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP46673065
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42410.11e-19zinc finger protein 11