PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.G01567.3

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

FAR1

Protein Properties

Length: 275aa MW: 31071.8 Da PI: 6.6349

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.G01567.3	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	47.3	6.9e-15	89	167	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 ++Yn+YA +GFs+rks++k++ +g+ +++ +vCs eg+ + +k + tr g a+++ + +k+g w v+k++leHnH la Pahal.G01567.3 89 EMYNTYAGITGFSIRKSTTKYR-PDGTLYQKFLVCSSEGFGNASKGT----------TRSGYGARVQFTISKEGIWTVQKVVLEHNHYLA 167 58************998776.8999**********998877..........8999999999999999************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.7E-11	89	167	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 275 aa Download sequence Send to blast
MESEEITDHD ATKPVPTQYV SNVAAGHDDR LEASNATAAR HDDLEANMVV PAERVDDQMH 60 ATEVADKIKQ TLIVPKVGMA FESEDNAYEM YNTYAGITGF SIRKSTTKYR PDGTLYQKFL 120 VCSSEGFGNA SKGTTRSGYG ARVQFTISKE GIWTVQKVVL EHNHYLASSN KKKNLRSQRR 180 VTEADRMLIG HIQEAGMRPS QVFEFMKQFY GGANKVPFGR MDCNNEISRE RKKYLESNDA 240 QKLCNYLKNK QLEDPTFFYA VDIDEETGRI VNFF*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008656905.1	1e-122	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A2T8IGC4	0.0	A0A2T8IGC4_9POAL; Uncharacterized protein
STRING	Sb04g005390.1	1e-102	(Sorghum bicolor)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-29	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Pahal.G01567.3