PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.G01567.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | FAR1 | ||||||||
Protein Properties | Length: 275aa MW: 31071.8 Da PI: 6.6349 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 47.3 | 6.9e-15 | 89 | 167 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 ++Yn+YA +GFs+rks++k++ +g+ +++ +vCs eg+ + +k + tr g a+++ + +k+g w v+k++leHnH la Pahal.G01567.2 89 EMYNTYAGITGFSIRKSTTKYR-PDGTLYQKFLVCSSEGFGNASKGT----------TRSGYGARVQFTISKEGIWTVQKVVLEHNHYLA 167 58**************998776.8999**************998877..........8999999999999999**************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 4.7E-11 | 89 | 167 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 275 aa Download sequence Send to blast |
MESEEITDHD ATKPVPTQYV SNVAAGHDDR LEASNATAAR HDDLEANMVV PAERVDDQMH 60 ATEVADKIKQ TLIVPKVGMA FESEDNAYEM YNTYAGITGF SIRKSTTKYR PDGTLYQKFL 120 VCSSEGFGNA SKGTTRSGYG ARVQFTISKE GIWTVQKVVL EHNHYLASSN KKKNLRSQRR 180 VTEADRMLIG HIQEAGMRPS QVFEFMKQFY GGANKVPFGR MDCNNEISRE RKKYLESNDA 240 QKLCNYLKNK QLEDPTFFYA VDIDEETGRI VNFF* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008656905.1 | 1e-122 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A2T8IGC4 | 0.0 | A0A2T8IGC4_9POAL; Uncharacterized protein | ||||
STRING | Sb04g005390.1 | 1e-102 | (Sorghum bicolor) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 2e-29 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.G01567.2 |