PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.G01567.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

FAR1

Protein Properties

Length: 350aa MW: 39189.1 Da PI: 8.6639

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.G01567.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	46.7	1e-14	164	242	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 ++Yn+YA +GFs+rks++k++ +g+ +++ +vCs eg+ + +k + tr g a+++ + +k+g w v+k++leHnH la Pahal.G01567.1 164 EMYNTYAGITGFSIRKSTTKYR-PDGTLYQKFLVCSSEGFGNASKGT----------TRSGYGARVQFTISKEGIWTVQKVVLEHNHYLA 242 58************998776.8999**********998877..........8999999999999999************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	7.3E-11	164	242	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 350 aa Download sequence Send to blast
MTPLTVSTIA AATSLFPTAD HRRFSLSGPP QRAPPPVSHQ TSPSCPLAVA PCSSSRRRHR 60 FSQPPIRRHD LPPSNMESEE ITDHDATKPV PTQYVSNVAA GHDDRLEASN ATAARHDDLE 120 ANMVVPAERV DDQMHATEVA DKIKQTLIVP KVGMAFESED NAYEMYNTYA GITGFSIRKS 180 TTKYRPDGTL YQKFLVCSSE GFGNASKGTT RSGYGARVQF TISKEGIWTV QKVVLEHNHY 240 LASSNKKKNL RSQRRVTEAD RMLIGHIQEA GMRPSQVFEF MKQFYGGANK VPFGRMDCNN 300 EISRERKKYL ESNDAQKLCN YLKNKQLEDP TFFYAVDIDE ETGRIVNFF*

Sequence ? help Back to Top

Protein Sequence Length: 350 aa Download sequence Send to blast

MTPLTVSTIA AATSLFPTAD HRRFSLSGPP QRAPPPVSHQ TSPSCPLAVA PCSSSRRRHR  60
FSQPPIRRHD LPPSNMESEE ITDHDATKPV PTQYVSNVAA GHDDRLEASN ATAARHDDLE  120
ANMVVPAERV DDQMHATEVA DKIKQTLIVP KVGMAFESED NAYEMYNTYA GITGFSIRKS  180
TTKYRPDGTL YQKFLVCSSE GFGNASKGTT RSGYGARVQF TISKEGIWTV QKVVLEHNHY  240
LASSNKKKNL RSQRRVTEAD RMLIGHIQEA GMRPSQVFEF MKQFYGGANK VPFGRMDCNN  300
EISRERKKYL ESNDAQKLCN YLKNKQLEDP TFFYAVDIDE ETGRIVNFF*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008656905.1	1e-121	protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_008670948.1	1e-117	protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_020404946.1	1e-119	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A2T8IGC4	0.0	A0A2T8IGC4_9POAL; Uncharacterized protein
STRING	Sb04g005390.1	1e-102	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1212	5	87

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-28	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Pahal.G01567.1