PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.G01423.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

NAC

Protein Properties

Length: 355aa MW: 40374.3 Da PI: 6.4068

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.G01423.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	179.5	8.6e-56	7	136	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 +ppGfrFhPtdeelv++yL+kkv+ +k++l +vik+vd+yk+ePwdL++ k+ + e++ewyfFs++dkky+tg+r+nrat++g+Wkatg+dk++ Pahal.G01423.1 7 VPPGFRFHPTDEELVDYYLRKKVALRKIDL-DVIKDVDLYKIEPWDLQEkcKIGNeEQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKPI 100 69**************************.9***********952444332555******************************** PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrle 129 ++ k+ lvg++ktLvfykgrap+g+k+dW+mheyrle Pahal.G01423.1 101 YV-KNCLVGMRKTLVFYKGRAPNGQKSDWIMHEYRLE 136 .999*****************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.48E-60	5	156	IPR003441	NAC domain
PROSITE profile	PS51005	59.333	7	156	IPR003441	NAC domain
Pfam	PF02365	3.4E-28	8	135	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 355 aa Download sequence Send to blast
MDAFTHVPPG FRFHPTDEEL VDYYLRKKVA LRKIDLDVIK DVDLYKIEPW DLQEKCKIGN 60 EEQNEWYFFS HKDKKYPTGT RTNRATTAGF WKATGRDKPI YVKNCLVGMR KTLVFYKGRA 120 PNGQKSDWIM HEYRLETNEN GFPHEEGWVV CRVFRKRLAT VQRMAGDSPY WFSDHAGFMA 180 PELLGSPRQA AHHQQTTAAM YHRPQSSSSS SYHPCKVELE YHHLLPQEHF LQQLPQLESP 240 NKLPDLIGGQ VATTLQPCSL AEEHGAPRYT VPELHAEPIF LPAGDASGTD WRALDKFVAS 300 QFISHGDTDT PPKQGSGYSD PAVQVFEQAE EKEEEALEYV STSASCGGDN VLWK*

Sequence ? help Back to Top

Protein Sequence Length: 355 aa Download sequence Send to blast

MDAFTHVPPG FRFHPTDEEL VDYYLRKKVA LRKIDLDVIK DVDLYKIEPW DLQEKCKIGN  60
EEQNEWYFFS HKDKKYPTGT RTNRATTAGF WKATGRDKPI YVKNCLVGMR KTLVFYKGRA  120
PNGQKSDWIM HEYRLETNEN GFPHEEGWVV CRVFRKRLAT VQRMAGDSPY WFSDHAGFMA  180
PELLGSPRQA AHHQQTTAAM YHRPQSSSSS SYHPCKVELE YHHLLPQEHF LQQLPQLESP  240
NKLPDLIGGQ VATTLQPCSL AEEHGAPRYT VPELHAEPIF LPAGDASGTD WRALDKFVAS  300
QFISHGDTDT PPKQGSGYSD PAVQVFEQAE EKEEEALEYV STSASCGGDN VLWK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	3e-49	2	157	10	169	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250\|UniProtKB:Q9LVA1, ECO:0000269\|PubMed:16103214, ECO:0000269\|PubMed:25148240}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KT075088	0.0	KT075088.1 Panicum virgatum secondary wall NAC master switch (SWN6A) mRNA, complete cds.
GenBank	KT075089	0.0	KT075089.1 Panicum virgatum secondary wall NAC master switch (SWN6B) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025823105.1	0.0	NAC domain-containing protein 105-like
Swissprot	Q9FWX2	1e-120	NAC7_ARATH; NAC domain-containing protein 7
TrEMBL	A0A2S3I8X5	0.0	A0A2S3I8X5_9POAL; Uncharacterized protein
STRING	Pavir.Gb00744.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2370	38	92

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G12260.1	1e-107	NAC 007

Link Out ? help Back to Top
Phytozome	Pahal.G01423.1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469]