PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.G01401.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 381aa    MW: 39509.2 Da    PI: 6.7823
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.G01401.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.62.2e-1690137148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+W +eEd+llvd v+  G+g+W+  ++  g++R++k+c++rw +yl
   Pahal.G01401.1  90 KGPWAPEEDKLLVDFVQANGPGNWRMLPKLAGLNRCGKSCRLRWTNYL 137
                      79********************************************97 PP
2Myb_DNA-binding52.98.7e-17143188148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++TteE+  ++++++  G++ W+ Ia+ ++ gRt++++k++w+++l
   Pahal.G01401.1 143 RGPFTTEEHNSILQLHAIVGNK-WSMIAAQLP-GRTDNEIKNYWNTHL 188
                      89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.25685137IPR017930Myb domain
SuperFamilySSF466892.55E-3087184IPR009057Homeodomain-like
SMARTSM007171.5E-1289139IPR001005SANT/Myb domain
PfamPF002493.2E-1490137IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.8E-2291144IPR009057Homeodomain-like
CDDcd001671.91E-992137No hitNo description
PROSITE profilePS5129426.601138192IPR017930Myb domain
SMARTSM007171.0E-14142190IPR001005SANT/Myb domain
PfamPF002492.2E-14143188IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-26145192IPR009057Homeodomain-like
CDDcd001678.97E-11145188No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MPLPVVVAGL QQQPAARENP SHLWPPGSSS AYKSVGIYGH GSSSASLLVV PVVAADATEG  60
RERESDRRSV AAAAAAMGRT PCCDSKGIKK GPWAPEEDKL LVDFVQANGP GNWRMLPKLA  120
GLNRCGKSCR LRWTNYLRPD IKRGPFTTEE HNSILQLHAI VGNKWSMIAA QLPGRTDNEI  180
KNYWNTHLKK QLRQEALAGA DAAAQQLAAA GAASSCPAAR HMTQWETARL EAEARLSLLS  240
SSATTTVASA TAASSSSSTA AAEHEAAPDI FLRLWNSAVG ESFRCSAQGQ GAAAAHGPAA  300
ASPAAAGTPA ALRPAAPSGG GDDSSAASTN GTEAADDYQA FLDMAVEELA LLHGRLGVSF  360
SAFPTADVLA EASCLFAPFE *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C2e-28901924105C-Myb DNA-Binding Domain
1msf_C2e-28901924105C-Myb DNA-Binding Domain
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1086211e-118AK108621.1 Oryza sativa Japonica Group cDNA clone:002-147-D04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825374.10.0transcription factor MYB41-like
TrEMBLA0A2S3I8U30.0A0A2S3I8U3_9POAL; Uncharacterized protein
TrEMBLA0A2T7CXW30.0A0A2T7CXW3_9POAL; Uncharacterized protein
STRINGPavir.Gb00736.1.p1e-159(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP54093157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.18e-65myb domain protein 17