PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.G01398.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 288aa    MW: 30612.3 Da    PI: 5.9589
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.G01398.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding475.7e-151562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEde+l d + ++G g+W++ +++ g+ R +k+c++rw +yl
   Pahal.G01398.1 15 KGLWSPEEDEKLRDFILRYGHGCWSALPAKAGLQRNGKSCRLRWINYL 62
                     678*******************************************97 PP

2Myb_DNA-binding49.41e-1569113248
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      g ++ eE+e    +++++G++ W+ Iar ++ gRt++++k++w++yl
   Pahal.G01398.1  69 GMFSREEEETVMSLHAKMGNK-WSQIARLLP-GRTDNEVKNYWNSYL 113
                      56999****************.*********.*************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.5611062IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.0E-201065IPR009057Homeodomain-like
SuperFamilySSF466893.08E-2813109IPR009057Homeodomain-like
SMARTSM007175.5E-111464IPR001005SANT/Myb domain
PfamPF002495.9E-131562IPR001005SANT/Myb domain
CDDcd001671.61E-101862No hitNo description
PROSITE profilePS5129424.60763117IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.9E-2566116IPR009057Homeodomain-like
SMARTSM007172.1E-1367115IPR001005SANT/Myb domain
PfamPF002493.4E-1469113IPR001005SANT/Myb domain
CDDcd001671.34E-1171113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0010018Biological Processfar-red light signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MGCKACQKPK VQYRKGLWSP EEDEKLRDFI LRYGHGCWSA LPAKAGLQRN GKSCRLRWIN  60
YLRPGLKHGM FSREEEETVM SLHAKMGNKW SQIARLLPGR TDNEVKNYWN SYLKKRVEGG  120
AQAKCAADPA TPAGSSDVRA GSPNPSDNCQ GGANRPASSD SSEPVESSSA DDSSCLTVTE  180
PAGAAAAVRP HAPVLPKVMF ADWLDMDYGT SLVALGPDAG VFDASGRSLS HQGSVQVDGP  240
CGAVDSLHGL GDGGICWGFD DAAADQMDVQ GAGFCDLLSM SEFLGIN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-26151187109B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes photomorphogenesis in the light by participating in the transmission of phytochrome A (phyA) signals to downstream responses (PubMed:11581165, PubMed:19482971). Probably acts by activating expression of light-induced genes. In darkness, its degradation prevents the activation of light-induced genes (PubMed:11581165). {ECO:0000269|PubMed:11581165, ECO:0000269|PubMed:19482971}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By hormones or elicitors treatment. By exposure to abiotic stress. {ECO:0000269|PubMed:9839469}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0915921e-151FP091592.1 Phyllostachys edulis cDNA clone: bphylf055c23, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025823961.10.0transcription factor LAF1-like
SwissprotQ9M0K44e-60LAF1_ARATH; Transcription factor LAF1
TrEMBLA0A2S3I9F50.0A0A2S3I9F5_9POAL; Uncharacterized protein
STRINGSi012304m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP170737109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25560.15e-59myb domain protein 18
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]