PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.G01340.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | TCP | ||||||||
Protein Properties | Length: 203aa MW: 20922.8 Da PI: 10.5997 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 110.3 | 2.8e-34 | 50 | 147 | 9 | 89 |
TCP 9 skihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa.sec.eaesssssasnsssg............. 88 +++h+kv+gR+RRvR+++ caar+F+L++eLG+++d++tieWLl+qa+p+i ++tg+++++a +c + + s ss + s+ Pahal.G01340.1 50 KDRHSKVNGRGRRVRMPIVCAARVFQLTRELGLKSDGQTIEWLLRQAEPSILAATGSGTTPAvFSCsS-APSTSSPA---SAahpllgkrpredh 140 89*******************************************************99999444521.22222222...111224444444444 PP TCP 89 ......k 89 + Pahal.G01340.1 141 epapapA 147 3333330 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 2.2E-30 | 49 | 143 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 27.009 | 49 | 103 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 203 aa Download sequence Send to blast |
MASRDAATFQ VYRPMPAPTP APAPMSLAAA APASDVAAPA LKKASPGAGK DRHSKVNGRG 60 RRVRMPIVCA ARVFQLTREL GLKSDGQTIE WLLRQAEPSI LAATGSGTTP AVFSCSSAPS 120 TSSPASAAHP LLGKRPREDH EPAPAPAPFW ATLQARPVAW GLSPAQEAAA QAYASVAAQQ 180 GHHLNLLSVL SGAARPSEEE SR* |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ727696 | 1e-105 | KJ727696.1 Zea mays clone pUT5635 TCP transcription factor (TCP14) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025826214.1 | 1e-141 | transcription factor PCF1-like | ||||
TrEMBL | A0A2S3I8K6 | 1e-139 | A0A2S3I8K6_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A2T7CXN8 | 1e-139 | A0A2T7CXN8_9POAL; Uncharacterized protein | ||||
STRING | Si011076m | 2e-93 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1941 | 33 | 100 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23280.1 | 3e-36 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | Pahal.G01340.1 |