PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.G01340.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family TCP
Protein Properties Length: 203aa    MW: 20922.8 Da    PI: 10.5997
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.G01340.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP110.32.8e-3450147989
             TCP   9 skihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa.sec.eaesssssasnsssg............. 88 
                     +++h+kv+gR+RRvR+++ caar+F+L++eLG+++d++tieWLl+qa+p+i ++tg+++++a  +c + + s ss +   s+             
  Pahal.G01340.1  50 KDRHSKVNGRGRRVRMPIVCAARVFQLTRELGLKSDGQTIEWLLRQAEPSILAATGSGTTPAvFSCsS-APSTSSPA---SAahpllgkrpredh 140
                     89*******************************************************99999444521.22222222...111224444444444 PP

             TCP  89 ......k 89 
                           +
  Pahal.G01340.1 141 epapapA 147
                     3333330 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.2E-3049143IPR005333Transcription factor, TCP
PROSITE profilePS5136927.00949103IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MASRDAATFQ VYRPMPAPTP APAPMSLAAA APASDVAAPA LKKASPGAGK DRHSKVNGRG  60
RRVRMPIVCA ARVFQLTREL GLKSDGQTIE WLLRQAEPSI LAATGSGTTP AVFSCSSAPS  120
TSSPASAAHP LLGKRPREDH EPAPAPAPFW ATLQARPVAW GLSPAQEAAA QAYASVAAQQ  180
GHHLNLLSVL SGAARPSEEE SR*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7276961e-105KJ727696.1 Zea mays clone pUT5635 TCP transcription factor (TCP14) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025826214.11e-141transcription factor PCF1-like
TrEMBLA0A2S3I8K61e-139A0A2S3I8K6_9POAL; Uncharacterized protein
TrEMBLA0A2T7CXN81e-139A0A2T7CXN8_9POAL; Uncharacterized protein
STRINGSi011076m2e-93(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP194133100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23280.13e-36TCP family protein