PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.G01226.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 229aa MW: 24277.6 Da PI: 8.7699 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 69.2 | 3.8e-22 | 18 | 65 | 2 | 49 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 rie++ rqv fskRr+g++KKA+ELS+LC a+va i+fs+ gk + + Pahal.G01226.1 18 RIESDEARQVCFSKRRAGLFKKASELSILCSADVAAIVFSPAGKAFSF 65 8******************************************97766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 26.324 | 9 | 69 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.3E-32 | 9 | 68 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.27E-41 | 10 | 81 | No hit | No description |
SuperFamily | SSF55455 | 1.31E-28 | 10 | 82 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.6E-20 | 11 | 31 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.1E-25 | 18 | 65 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.6E-20 | 31 | 46 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.6E-20 | 46 | 67 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
MAPPRRPSLG RQKIEIRRIE SDEARQVCFS KRRAGLFKKA SELSILCSAD VAAIVFSPAG 60 KAFSFGHPSV ESILDRFLDS SPVAGPGLSS AGDRAVSELN RQYGELRAQL DAEKARQERA 120 DETIRKERAA SSQAMVWVDA DLSAMGHDDL IAFWGALIGV QAAVAASADQ LLRDALLVGR 180 RGRQPAQLTG GAAFDVVAFG VRMQPPPGFA GVDLQGFGGQ ATILAPSF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 2e-16 | 9 | 102 | 1 | 91 | MEF2C |
5f28_B | 2e-16 | 9 | 102 | 1 | 91 | MEF2C |
5f28_C | 2e-16 | 9 | 102 | 1 | 91 | MEF2C |
5f28_D | 2e-16 | 9 | 102 | 1 | 91 | MEF2C |
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Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU962654 | 1e-127 | EU962654.1 Zea mays clone 244495 DNA binding protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025825087.1 | 1e-161 | agamous-like MADS-box protein AGL29 | ||||
TrEMBL | A0A2S3I5U4 | 1e-159 | A0A2S3I5U4_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J11717.1.p | 1e-142 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1224 | 36 | 128 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 4e-33 | AGAMOUS-like 62 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.G01226.1 |