PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.G01207.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 521aa    MW: 58649.7 Da    PI: 8.7287
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.G01207.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B337.93.2e-12105189897
                     -HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
              B3   8 sdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                      d+++   + +p +f++++  ++  + ++ ++ ++ g+ W++kl  ++ ++++++++ W++F   +g+ eg++++++++g++ f  ++kvf
  Pahal.G01207.1 105 QDSME--EMKIPARFVKHYiTEECLNRQMAVVVSPLGKFWRIKL--QNDQSGVFFAGVWSQFLAFHGISEGEVLLLRYEGNMVF--KFKVF 189
                     44444..489******88884444566789999***********..999999****************************9999..66666 PP
2B356.84.2e-18261344186
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-S CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldg 86 
                     ++k+ +++++l++ +++lp kf+ ++g +  +++tl+    s rsW+v+     +++  y+l++GWk F+++n+Lk gD ++F++++
  Pahal.G01207.1 261 WVKKKITAYMLER-LISLPVKFCHSIGFQRDCTITLKTAIDSTRSWQVRG--VTYKKVcYLLGEGWKCFCEENRLKKGDLCTFHVIE 344
                     6899999999998.5***********99977766666555788*******..4444444************************9775 PP
3B341.91.7e-134365071184
                     HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE CS
              B3  11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkl 84 
                     + + ++vl   f++++++++++ +tl+    s rsW ++   +k++++ y+l++G k+F ++n+Lk+gD+++F +
  Pahal.G01207.1 436 N-QYIVVLAQGFCDAIELQEPCMITLKTSINSTRSWLIRG--TKQRNGcYLLGSGRKKFSQENELKVGDICTFNV 507
                     3.44699************99987777777899*******..8888888************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508637.81189IPR003340B3 DNA binding domain
SuperFamilySSF1019361.77E-52462IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.5E-42663IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.89896192IPR003340B3 DNA binding domain
CDDcd100178.57E-1297189No hitNo description
SuperFamilySSF1019361.02E-1697198IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.3E-999192IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.6E-1599194IPR015300DNA-binding pseudobarrel domain
PfamPF023621.4E-9107189IPR003340B3 DNA binding domain
SuperFamilySSF1019363.14E-17259353IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.2E-7261356IPR003340B3 DNA binding domain
PfamPF023628.3E-14261344IPR003340B3 DNA binding domain
CDDcd100172.26E-10263341No hitNo description
Gene3DG3DSA:2.40.330.102.7E-17263353IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.659275356IPR003340B3 DNA binding domain
PROSITE profilePS508639.206425520IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.0E-10432519IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.53E-10432519IPR015300DNA-binding pseudobarrel domain
PfamPF023621.5E-9440508IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 521 aa     Download sequence    Send to blast
MPISDELAGC FDASSGGGTG VPGPTALVVS PFGKVWRVDV GRDGDGKFLG RGWADFLAAH  60
GIDRRRLAFD TVFCIKEFAA TTAVMTSGSS KGVYCKPRFL TIIQQDSMEE MKIPARFVKH  120
YITEECLNRQ MAVVVSPLGK FWRIKLQNDQ SGVFFAGVWS QFLAFHGISE GEVLLLRYEG  180
NMVFKFKVFE ISGCQKDLKN HNTSIQQDCI KQESPSPIKK RKADNERASS DEEKRSKSSV  240
TSLNNASPLN GLDYQIGPPA WVKKKITAYM LERLISLPVK FCHSIGFQRD CTITLKTAID  300
STRSWQVRGV TYKKVCYLLG EGWKCFCEEN RLKKGDLCTF HVIETMLWHV VITHYIDKKK  360
ESPCSSSMER KSVNQRLGSE EQLRPQGSMI YLSKASSYTR PLIFSLTIFA CYFGESDHEL  420
IYLICAKDRC IPEDTNQYIV VLAQGFCDAI ELQEPCMITL KTSINSTRSW LIRGTKQRNG  480
CYLLGSGRKK FSQENELKVG DICTFNVVEI SLWHVVITRA *
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825232.10.0LOW QUALITY PROTEIN: putative B3 domain-containing protein Os04g0347400
TrEMBLA0A2T8IBR30.0A0A2T8IBR3_9POAL; Uncharacterized protein
STRINGPavir.J00273.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42535187
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.19e-12B3 family protein