PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.G01184.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 422aa    MW: 44296.1 Da    PI: 7.0707
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.G01184.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.45.4e-05123144223
                     EETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                     +Cp Cgk F++  ++  H+r+H
  Pahal.G01184.1 123 ECPECGKFFKNDKSMFGHLRSH 144
                     6*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.014122144IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.263122149IPR007087Zinc finger, C2H2
SuperFamilySSF576672.27E-8123144No hitNo description
PfamPF139120.0039123144IPR007087Zinc finger, C2H2
PROSITE patternPS000280124144IPR007087Zinc finger, C2H2
SuperFamilySSF576672.27E-8282309No hitNo description
SMARTSM003550.8287310IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.951287314IPR007087Zinc finger, C2H2
PfamPF139121.1E-5287311IPR007087Zinc finger, C2H2
PROSITE patternPS000280289310IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MSKGGLLCSV LLLQVCVAQL SLISGSHLTG VRIGRDLLCC QDPIRRARLM SRHCHDEFDG  60
HSADSIFDDE GADTSDEYAS IDGAGNEEEE GLPSLPPDGY DGGGGSGGGA KDSSGSGGGG  120
DVECPECGKF FKNDKSMFGH LRSHPNRGYK GSTPPVNKLK LSPDAAAVAS SSSSSPPEIL  180
CAYAILALRY RGNSQVAQVP PPPSFEKLDA VGAQGGAGGS ATGNAAAEFK CNNAGAEAGN  240
HLGNRHEHGD SFVKIPKKRR NKPTQVIREA HRKKAKLVPS PKEKRPYHCK HCKAAFATNQ  300
ALGGHVAGHH REKKVPRLSD SSGMAAGSLN GKLKVEDDDD DDKDLPLPRG VLSEKFSMGF  360
DVPWQSGQQA SGRQVRQHSE RRNDGLSPEA AAATPTPAPT DGGGGSRLWS IDLNVEAPEQ  420
E*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1255262PKKRRNKP
2256261KKRRNK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025813526.11e-156uncharacterized protein LOC112890871
TrEMBLA0A2T8IBR60.0A0A2T8IBR6_9POAL; Uncharacterized protein
STRINGPavir.Gb02113.1.p1e-164(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139162028
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17180.18e-07C2H2-like zinc finger protein