PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.G01171.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | MYB | ||||||||
Protein Properties | Length: 984aa MW: 110482 Da PI: 4.908 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 43.1 | 9.9e-14 | 8 | 53 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g W Ede+l+ av ++G+++W++I++ + ++++kqck rw+ +l Pahal.G01171.1 8 GVWKNTEDEILKAAVMKYGKNQWARISSLLV-RKSAKQCKARWYEWL 53 78*****************************.************986 PP | |||||||
2 | Myb_DNA-binding | 32.8 | 1.6e-10 | 60 | 103 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 WT eEde+l+++ k++++ W+tIa +g Rt+ qc +r+ k+l Pahal.G01171.1 60 TEWTREEDEKLLHLAKLMPTQ-WRTIAPIVG--RTPSQCLERYEKLL 103 68*****************99.********8..**********9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 22.008 | 2 | 57 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.7E-18 | 5 | 56 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.0E-15 | 6 | 55 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.21E-12 | 10 | 53 | No hit | No description |
Pfam | PF13921 | 4.6E-13 | 10 | 70 | No hit | No description |
SuperFamily | SSF46689 | 6.47E-21 | 33 | 108 | IPR009057 | Homeodomain-like |
CDD | cd11659 | 1.51E-30 | 55 | 106 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.4E-14 | 57 | 104 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.443 | 58 | 107 | IPR017930 | Myb domain |
SMART | SM00717 | 1.7E-12 | 58 | 105 | IPR001005 | SANT/Myb domain |
Pfam | PF11831 | 5.2E-59 | 405 | 657 | IPR021786 | Pre-mRNA splicing factor component Cdc5p/Cef1 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009870 | Biological Process | defense response signaling pathway, resistance gene-dependent | ||||
GO:0010204 | Biological Process | defense response signaling pathway, resistance gene-independent | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0009507 | Cellular Component | chloroplast | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 984 aa Download sequence Send to blast |
MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT 60 EWTREEDEKL LHLAKLMPTQ WRTIAPIVGR TPSQCLERYE KLLDAACAKD ENYEPNDDPR 120 KLRPGEIDPN PESKPARPDP VDMDEDEKEM LSEARARLAN TRGKKAKRKA REKQLEEARR 180 LASLQKRREL KAAGIDTRQR KRKRKGIDYN AEIPFEKRPP PGFYDTVGED KPPEHVQFPT 240 TIEDLEGKRR VDIEAQLRKQ DIARNKILQR QDAPAAIMQA NKLNDPEAVT RRSKLMLPPP 300 QISDHELEEI AKMGSAGDPA LAEELGEGST ATRALLSSYS QTPRLGMTPL RTPQRTPAGK 360 GDAIMMEAEN LARLRESQTP LLGGDNPDLH PSDFSGVTPR KEIQTPNPMA TPLALASPGP 420 GVTPRVGMTP SRDGNSFVIT PKATPFRDEL RINEEVELQD SAKLELRRQA ELRRSLRSGF 480 ASIPQPKNEY QIVMPPITED EKEEAEERIE EDMSDRLARE RAEEQARQEA LLRKRSKVLQ 540 RSLPRPPAAS VEVLRQSLIK GGESRSRSTF VPPTSLEQAD DLINEELLRL LEHDNAKYPL 600 DEKTQKEKKK GNKRQANAAA VPEIEDLDED ELKEASSLVQ EEIQYLRVAM GHENESFEDF 660 VKAHDACQED LMYFPTKNSY GLASVAGNAD KLSALQNEFE IVKKRMDEEA KKASRLEQKI 720 KLLTQGYQVR AGKLWSQVQD TFKQMDTAAT ELECFQELQK QEQLAASYRV RNLTEEVDKQ 780 KALERTLQSR YGDLMSVYHR IQEQLEEHKI QLRKQEAIEA ENRAREEAAA QNCAAEEENE 840 RIRNVEVGKE HMNSVTDEEP APAGSKQINE DQMDVDNNNV DGEFVGPIPP APDTQGDIIE 900 ASAQENSSNA PSSDGVTTNG EACDMVDASK VESQDNASGS LLVDAGNQED GKNSIPLVGA 960 SEGNAALSSD GAVTNEQNDM VPE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5mqf_L | 0.0 | 2 | 795 | 3 | 792 | Cell division cycle 5-like protein |
5xjc_L | 0.0 | 2 | 795 | 3 | 792 | Cell division cycle 5-like protein |
5yzg_L | 0.0 | 2 | 795 | 3 | 792 | Cell division cycle 5-like protein |
5z56_L | 0.0 | 2 | 795 | 3 | 792 | Cell division cycle 5-like protein |
5z57_L | 0.0 | 2 | 795 | 3 | 792 | Cell division cycle 5-like protein |
5z58_L | 0.0 | 2 | 795 | 3 | 792 | Cell division cycle 5-like protein |
6ff4_L | 0.0 | 2 | 795 | 3 | 792 | Cell division cycle 5-like protein |
6ff7_L | 0.0 | 2 | 795 | 3 | 792 | Cell division cycle 5-like protein |
6icz_L | 0.0 | 2 | 795 | 3 | 792 | Cell division cycle 5-like protein |
6id0_L | 0.0 | 2 | 795 | 3 | 792 | Cell division cycle 5-like protein |
6id1_L | 0.0 | 2 | 795 | 3 | 792 | Cell division cycle 5-like protein |
6qdv_O | 0.0 | 2 | 795 | 3 | 792 | Cell division cycle 5-like protein |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 185 | 204 | KRRELKAAGIDTRQRKRKRK |
2 | 199 | 204 | RKRKRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity. Possesses a sequence specific DNA sequence 'CTCAGCG' binding activity. Involved in mRNA splicing and cell cycle control. May also play a role in the response to DNA damage. {ECO:0000250|UniProtKB:Q99459, ECO:0000269|PubMed:17298883, ECO:0000269|PubMed:17575050, ECO:0000269|PubMed:8917598}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00028 | SELEX | Transfer from AT1G09770 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025823518.1 | 0.0 | cell division cycle 5-like protein | ||||
Swissprot | P92948 | 0.0 | CDC5L_ARATH; Cell division cycle 5-like protein | ||||
TrEMBL | A0A2S3I5S1 | 0.0 | A0A2S3I5S1_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ga02351.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4416 | 35 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09770.1 | 0.0 | cell division cycle 5 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.G01171.1 |
Publications ? help Back to Top | |||
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