PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.G01169.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | ARR-B | ||||||||
Protein Properties | Length: 329aa MW: 36919.2 Da PI: 5.0398 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 48.3 | 2.2e-15 | 167 | 213 | 4 | 51 |
G2-like 4 lrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 ++W++ LH++F++a+e L G+ A P++i lm+v+g+ ++h++SHLQ Pahal.G01169.2 167 ICWNEYLHRKFLRALEIL-GEGAASPRNIEILMNVEGVNRKHIASHLQ 213 79****************.9**************************** PP | |||||||
2 | Response_reg | 47.1 | 1.3e-16 | 15 | 122 | 1 | 107 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 v++vd+++ ++ r++l +y ++++ +++ +ale l+ + +Dl l+ + m +++G+++l +++++++i+++ + +++++++++k+G Pahal.G01169.2 15 VIVVDEDKHHANSTRSMLCTLNY-HATAYTSPIKALEFLEGHAqeVDLALVAVHMEELHGFQFLDIVSDAHKNVQVIMMSNETTMDTMKRCIKLG 108 799********************.***************776667**********************99999*********************** PP ESEEEESS--HHHH CS Response_reg 94 akdflsKpfdpeel 107 a+ + Kp+d + Pahal.G01169.2 109 ARFLVNKPIDAHTI 122 *********98766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.40.50.2300 | 1.0E-20 | 11 | 130 | No hit | No description |
SuperFamily | SSF52172 | 2.99E-20 | 11 | 129 | IPR011006 | CheY-like superfamily |
SMART | SM00448 | 4.3E-5 | 13 | 126 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 23.848 | 14 | 130 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 5.5E-15 | 15 | 122 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 1.81E-11 | 16 | 119 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.0E-13 | 162 | 213 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.66E-9 | 162 | 213 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.8E-13 | 167 | 213 | IPR006447 | Myb domain, plants |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0009736 | Biological Process | cytokinin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 329 aa Download sequence Send to blast |
MDERAKLCPA NGLSVIVVDE DKHHANSTRS MLCTLNYHAT AYTSPIKALE FLEGHAQEVD 60 LALVAVHMEE LHGFQFLDIV SDAHKNVQVI MMSNETTMDT MKRCIKLGAR FLVNKPIDAH 120 TINNLWQHLD LKDYSRMDYI KNLLQGNGEA HDLSYLKENT KTKKGYICWN EYLHRKFLRA 180 LEILGEGAAS PRNIEILMNV EGVNRKHIAS HLQDEDMPHA KTGSFSDNNN AHAAMQRSIQ 240 FGTIYDESEY FYYSSGDEAT EDGVDMMEDD GTSASSFTAQ VSTAETFSAE GTKDILNNNS 300 SKKQDRHGDK VGKAIKLVDY SESEDDEI* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025825245.1 | 0.0 | two-component response regulator ORR29-like | ||||
TrEMBL | A0A2T7CTL7 | 0.0 | A0A2T7CTL7_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Gb02032.1.p | 0.0 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G25180.1 | 1e-21 | response regulator 12 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.G01169.2 |