PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.G01160.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bHLH

Protein Properties

Length: 414aa MW: 41805.5 Da PI: 7.125

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.G01160.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	30.4	7e-10	253	300	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR+ri +++ L++l+P + +k Ka +L + ++Y++sLq Pahal.G01160.1 253 SHSLAERVRRERISERMKMLQSLVPGC----NKITGKALMLDEIINYVQSLQ 300 8************************....999***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	2.14E-11	247	304	No hit	No description
SuperFamily	SSF47459	4.84E-17	247	317	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.4E-17	249	318	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.694	249	299	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.9E-7	253	300	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.2E-10	255	305	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 414 aa Download sequence Send to blast
MADEHFFPGP GDFPSGLGAA PFFGASYSYA PPPGLDAAAA MQGFGLAWAD LQLPDSSGTA 60 HFDSALSSLV SSPAHDGSGC GYGGDDVAIG DLIGRLGSIC GGAAASASNS CYSTPLSSPP 120 RAAAPSPAFR GCCGYPGGAA TAALEASGAG GRLSRVASSK SLGAGAGTPA SGSPEAEASR 180 PEMVPMGSGS TGTRDRDPAP PAKKRKASGK GKATSSAKGG EGKDGDDADT AAVKEPAKDY 240 IHVRARRGQA TDSHSLAERV RRERISERMK MLQSLVPGCN KITGKALMLD EIINYVQSLQ 300 RQVEFLSMKL ATMNPELDAD ARYQAAAALL APPPTAFPSS YDPSSFVATA HPAQLADSCA 360 GAFRPGWAAQ LDDLRSVAGA ARHDHSPAAA AAHGHGLHAP PSPPARDSFL HGK*

Sequence ? help Back to Top

Protein Sequence Length: 414 aa Download sequence Send to blast

MADEHFFPGP GDFPSGLGAA PFFGASYSYA PPPGLDAAAA MQGFGLAWAD LQLPDSSGTA  60
HFDSALSSLV SSPAHDGSGC GYGGDDVAIG DLIGRLGSIC GGAAASASNS CYSTPLSSPP  120
RAAAPSPAFR GCCGYPGGAA TAALEASGAG GRLSRVASSK SLGAGAGTPA SGSPEAEASR  180
PEMVPMGSGS TGTRDRDPAP PAKKRKASGK GKATSSAKGG EGKDGDDADT AAVKEPAKDY  240
IHVRARRGQA TDSHSLAERV RRERISERMK MLQSLVPGCN KITGKALMLD EIINYVQSLQ  300
RQVEFLSMKL ATMNPELDAD ARYQAAAALL APPPTAFPSS YDPSSFVATA HPAQLADSCA  360
GAFRPGWAAQ LDDLRSVAGA ARHDHSPAAA AAHGHGLHAP PSPPARDSFL HGK*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025825248.1	0.0	transcription factor bHLH62-like
Swissprot	Q9SRT2	4e-65	BH062_ARATH; Transcription factor bHLH62
TrEMBL	A0A2S3I5L6	0.0	A0A2S3I5L6_9POAL; Uncharacterized protein
STRING	Pavir.J21235.1.p	1e-126	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12547	28	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07340.1	4e-44	bHLH family protein

Link Out ? help Back to Top
Phytozome	Pahal.G01160.1

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]