PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.G01098.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ARF
Protein Properties Length: 704aa    MW: 75294.2 Da    PI: 7.6821
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.G01098.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.84.3e-23148249199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f k+lt+sd+++ g +++p+ +ae++        +++ +s  +  +d +g +W++++iyr++++r++lt+GW++Fv+ ++L +gD++vF   + +
  Pahal.G01098.1 148 FAKTLTQSDANNGGGFSVPRFCAETIfpeldyrAEPPVQS--VYARDVHGVEWTFRHIYRGTPRRHLLTTGWSNFVNKKKLLAGDSIVFL--RGE 238
                     89*********************999****9976666675..************************************************..448 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     +++ +v+++r+
  Pahal.G01098.1 239 NGRVHVGLRRA 249
                     9999***9996 PP
2Auxin_resp112.63.8e-37301384183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                     aa+ a+ +++Fevv++Prast+eF+v++  v+++++v++++GmRfkmafetedss++++ +Gt++gv+++d+ rWp+S+Wr+L+
  Pahal.G01098.1 301 AARLAAAGQPFEVVHYPRASTPEFCVRATAVRASMQVPWCPGMRFKMAFETEDSSRISWfMGTISGVHAADSARWPQSPWRLLQ 384
                     678999****************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.4E-36140251IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.02E-29141251IPR015300DNA-binding pseudobarrel domain
CDDcd100178.85E-21147248No hitNo description
PfamPF023626.7E-21148249IPR003340B3 DNA binding domain
PROSITE profilePS5086312.647148250IPR003340B3 DNA binding domain
SMARTSM010195.6E-21148250IPR003340B3 DNA binding domain
PfamPF065073.6E-32301384IPR010525Auxin response factor
PROSITE profilePS5174518.152616694IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 704 aa     Download sequence    Send to blast
MSAAACAPTR LGMLTFADRM APPPMEEEPP AAAAGEGCVN AQLWLACAGS MCTVPPVGAA  60
VYYFPQGHAE QASAAVDMSA ARGVPPFVPC RVVAVRYMAE PHTDEVFARI RLVPLRPGEP  120
VADVGDAAAA GEGDAGGDHQ QQPKPASFAK TLTQSDANNG GGFSVPRFCA ETIFPELDYR  180
AEPPVQSVYA RDVHGVEWTF RHIYRGTPRR HLLTTGWSNF VNKKKLLAGD SIVFLRGENG  240
RVHVGLRRAK RGFGVGGGDD GSPSLAGWDP YGNLVRGNAG GPGGGARSPS GKVPPEDVVA  300
AARLAAAGQP FEVVHYPRAS TPEFCVRATA VRASMQVPWC PGMRFKMAFE TEDSSRISWF  360
MGTISGVHAA DSARWPQSPW RLLQVTWDEP ELLQNVKRVC PWLVEQVSSM PNLHLPNFSP  420
PPRKKQRIPE FPFEGQPLVD PPFPPAHPLP LLAPHPHPHP HHDQSHHHGL IPFFPFPDGS  480
AAAGIQGARH AQLAPFFSDL HIGNLQQSLL FCGVRPADHH APTAPRISTD LAIGNPPPRH  540
DAPRSPPAGA KKADDVKPVG IMLFGRAILT EEQMKSNSPT SPGATRKGSP DRSGSGVTEG  600
SPTKNSLLDA GLEPGHGQCK VFVESDAVGR NLDLSALGSF EELCARLSRM FRIHDADLRS  660
HVLYRTAAGE VKHVGDEPFN AFVRSARRIT ILGDAGSDST GSQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A4e-733940551388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822803.10.0auxin response factor 8-like
SwissprotQ01I350.0ARFJ_ORYSI; Auxin response factor 10
SwissprotQ7XKK60.0ARFJ_ORYSJ; Auxin response factor 10
TrEMBLA0A2S3I8G60.0A0A2S3I8G6_9POAL; Auxin response factor
STRINGSi009541m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51637152
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16