PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pahal.G01014.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 279aa MW: 30529 Da PI: 6.84 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.8 | 9.4e-17 | 18 | 65 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT +Ed+llv+ v+q G g+W+++++ g++R++k+c++rw +yl Pahal.G01014.2 18 KGPWTSQEDKLLVEHVRQRGEGRWNSVSKLTGLKRSGKSCRLRWVNYL 65 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 54.2 | 3.2e-17 | 71 | 115 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ T++E+ ++v++++++G++ W+tIar ++ gRt++++k++w+++ Pahal.G01014.2 71 RGKITPQEESIIVQLHALWGNR-WSTIARSLP-GRTDNEIKNYWRTH 115 8999******************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.128 | 13 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.39E-28 | 16 | 112 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.5E-13 | 17 | 67 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.2E-15 | 18 | 65 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.0E-22 | 19 | 72 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.83E-10 | 20 | 65 | No hit | No description |
PROSITE profile | PS51294 | 25.396 | 66 | 120 | IPR017930 | Myb domain |
SMART | SM00717 | 6.6E-16 | 70 | 118 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.9E-15 | 71 | 115 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.2E-24 | 73 | 118 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.11E-10 | 75 | 116 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 279 aa Download sequence Send to blast |
MEGAPLGWGR QEVDGWRKGP WTSQEDKLLV EHVRQRGEGR WNSVSKLTGL KRSGKSCRLR 60 WVNYLRPDLK RGKITPQEES IIVQLHALWG NRWSTIARSL PGRTDNEIKN YWRTHFKKGK 120 PSKNIERARA RFLKQRQEMQ SQQQQLLQLA GQVAKDHENQ EGGGARTGTT ADDEDRGSAV 180 VDDACVAPTV AAAEAAGGHH HDEDLIMHDA MDFMCPMSCA LLLHGAVHQG GGTGSCCGST 240 ASDEYGSGEE DGATWGSLWN LDGVVVDDAA AGACCTPW* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 7e-26 | 18 | 118 | 27 | 126 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK109620 | 1e-119 | AK109620.1 Oryza sativa Japonica Group cDNA clone:002-138-A05, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025824833.1 | 0.0 | transcription factor MYB8-like isoform X2 | ||||
TrEMBL | A0A2S3I861 | 0.0 | A0A2S3I861_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ga01308.1.p | 1e-151 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G13480.1 | 7e-63 | myb domain protein 79 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pahal.G01014.2 |