PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.G01014.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 280aa    MW: 30616.1 Da    PI: 6.84
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.G01014.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.79.5e-171865148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT +Ed+llv+ v+q G g+W+++++  g++R++k+c++rw +yl
   Pahal.G01014.1 18 KGPWTSQEDKLLVEHVRQRGEGRWNSVSKLTGLKRSGKSCRLRWVNYL 65
                     79********************************************97 PP
2Myb_DNA-binding52.98.3e-1771116147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg+ T++E+ ++v++++++G+ +W+tIar ++ gRt++++k++w+++
   Pahal.G01014.1  71 RGKITPQEESIIVQLHALWGNSRWSTIARSLP-GRTDNEIKNYWRTH 116
                      8999****************************.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.1281365IPR017930Myb domain
SuperFamilySSF466893.74E-2716113IPR009057Homeodomain-like
SMARTSM007174.5E-131767IPR001005SANT/Myb domain
PfamPF002492.2E-151865IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.1E-221972IPR009057Homeodomain-like
CDDcd001678.67E-102065No hitNo description
PROSITE profilePS5129423.8366121IPR017930Myb domain
SMARTSM007178.3E-1570119IPR001005SANT/Myb domain
PfamPF002491.7E-1471116IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.7E-2373119IPR009057Homeodomain-like
CDDcd001671.43E-1175117No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MEGAPLGWGR QEVDGWRKGP WTSQEDKLLV EHVRQRGEGR WNSVSKLTGL KRSGKSCRLR  60
WVNYLRPDLK RGKITPQEES IIVQLHALWG NSRWSTIARS LPGRTDNEIK NYWRTHFKKG  120
KPSKNIERAR ARFLKQRQEM QSQQQQLLQL AGQVAKDHEN QEGGGARTGT TADDEDRGSA  180
VVDDACVAPT VAAAEAAGGH HHDEDLIMHD AMDFMCPMSC ALLLHGAVHQ GGGTGSCCGS  240
TASDEYGSGE EDGATWGSLW NLDGVVVDDA AAGACCTPW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-241811927126MYB TRANSFORMING PROTEIN
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1096201e-113AK109620.1 Oryza sativa Japonica Group cDNA clone:002-138-A05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025824832.10.0transcription factor MYB8-like isoform X1
TrEMBLA0A2S3I8800.0A0A2S3I880_9POAL; Uncharacterized protein
STRINGPavir.Ga01308.1.p1e-149(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32433584
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13480.14e-61myb domain protein 79